Helicobacter pylori Hpfe049 |
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Putative Helicobacter pylori Hpfe049 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,613,080 bp
GenBank #: CP094133
REBASE acronym: Hpyfe49
Org_num: 57297
All begin MPG21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4355 | outer membrane beta-barrel protein HofF | |||
| 4360 | S | S.Hpyfe49ORF4670P (98% identity) | AAGNNNNNNCTT | S.Hpyfe49ORF4360P |
| 4365 | cadmium-translocating P-type ATPase | |||
| 4655 | hydroxyethylthiazole kinase | |||
| 4660 | R | HpyML1ORFXP (97% identity) | AAGNNNNNNCTT | Hpyfe49ORF4670P |
| 4665 | S | S.Hpyfe49ORF4360P (98% identity) | AAGNNNNNNCTT | S.Hpyfe49ORF4670P |
| 4670 | M | M.Hpyfe16ORF3435P (96% identity) | AAGNNNNNNCTT | M.Hpyfe49ORF4670P |
| 4675 | phosphatase PAP2 family protein | |||
| 4935 | type I restriction endonuclease | |||
| 4940 | R | Hpyfe118ORF5095P (96% identity) | CTANNNNNNTC | Hpyfe49ORF4945P |
| 4945 | M | M.HpyHP32ORF2220P (98% identity) | CTANNNNNNTC | M.Hpyfe49ORF4945P |
| 4950 | S | S.Hpyfe12ORF4875P (98% identity) | CTANNNNNNTC | S.Hpyfe49ORF4945P |
| 4960 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyK117ORF7265P (92% identity) | Hpyfe49ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe49ORF135P |
| 135 | M | M1.Hpyfe60ORF155P (99% identity) | CCATC | M1.Hpyfe49ORF135P |
| 140 | M | M2.Hpyfe3ORF155P (100% identity) | CCATC | M2.Hpyfe49ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | Hpyfe24ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe49ORF275P |
| 280 | S | S.HpyK048ORF6855P (94% identity) | CYANNNNNNTGA | S.Hpyfe49ORF275P |
| 285 | DNA polymerase I | |||
| 1395 | IceA2 protein | |||
| 1400 | M | M.HpyGU83AORFVP (92% identity) | CATG | M.Hpyfe49ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1845 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1850 | M | M.Hpyfe63ORF1855P (98% identity) | GCGC | M.Hpyfe49ORF1850P |
| 1855 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe80ORF2045P (99% identity) | TCNNGA | Hpyfe49ORF2030P |
| 2030 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe49ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2665 | ATP-dependent helicase | |||
| 2670 | M | M.HpyCA2IX (98% identity) | GTNNAC | M.Hpyfe49ORF2670P |
| 2675 | R | HpyK051VIIP (96% identity) | GTNNAC | Hpyfe49ORF2670P |
| 2680 | flagellar hook protein FlgE | |||
| 2865 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2870 | M | M.HpySG09VIII (99% identity) | GTAC | M.Hpyfe49ORF2870P |
| 2875 | R | HpySG02XIP (99% identity) | GTAC | Hpyfe49ORF2870P |
| 2880 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3830 | outer membrane protein | |||
| 3835 | RM | HpyK110ORF3020P (91% identity) | Hpyfe49ORF3835P | |
| 3840 | (Fe-S)-binding protein | |||
| 4825 | catalase | |||
| 4830 | R | Hpyfe79ORF4780P (99% identity) | ACGT | Hpyfe49ORF4835P |
| 4835 | M | M.Hpyfe37ORF4740P (99% identity) | ACGT | M.Hpyfe49ORF4835P |
| 4840 | GIY-YIG nuclease family protein | |||
| 4835 | DNA cytosine methyltransferase | |||
| 4840 | R | Hpyfe88ORF4775P (100% identity) | ACNGT | Hpyfe49ORF4845P |
| 4845 | M | M.HpyV002II (98% identity) | ACNGT | M.Hpyfe49ORF4845P |
| 4850 | translational GTPase TypA | |||
| 4855 | lipopolysaccharide heptosyltransferase family | |||
| 4860 | M | M.HpyBR17ORF2345P (93% identity) | ATTAAT | M.Hpyfe49ORF4860P |
| 4865 | Hop family outer membrane protein HopJ/HopK | |||
| 5370 | group I intron-associated PD-(D/E)XK | |||
| 5375 | M | M.Hpyoh1ORF4535P (99% identity) | GCNGC | M.Hpyfe49ORF5375P |
| 5380 | translation elongation factor 4 | |||
| 5810 | AAA family ATPase | |||
| 5815 | M | M.HpySG26III (99% identity) | CCGG | M.Hpyfe49ORF5815P |
| 5820 | R | HpyID1IVP (97% identity) | CCGG | Hpyfe49ORF5815P |
| 5825 | 204 aa hypothetical protein | |||
| 5825 | 204 aa hypothetical protein | |||
| 5830 | M | M.Hpyfe93ORF5890P (100% identity) | TCGA | M.Hpyfe49ORF5830P |
| 5835 | exodeoxyribonuclease VII large subunit | |||
| 6390 | pseudaminic acid synthase | |||
| 6395 | R | R2.HpyNP04ORF1110P (96% identity) | R2.Hpyfe49ORF6405P | |
| 6400 | R | R1.HpyTW21ORF915P (95% identity) | R1.Hpyfe49ORF6405P | |
| 6405 | M | M2.HpyK001ORF1005P (99% identity) | M2.Hpyfe49ORF6405P | |
| 6410 | M | M1.HpyHK840ORFG1P (98% identity) | M1.Hpyfe49ORF6405P | |
| 6415 | elongation factor P | |||
| 6795 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6800 | M | M.Hpyfe8ORF360P (98% identity) | GATC | M.Hpyfe49ORF6800P |
| 6805 | R | Hpy52ORF105P (96% identity) | GATC | Hpyfe49ORF6800P |
| 6815 | ACP S-malonyltransferase | |||
| 6970 | DNA cytosine methyltransferase | |||
| 6975 | R | Hpyfe32ORF6945P (98% identity) | CCTC | Hpyfe49ORF6980P |
| 6980 | M | M1.Hpyfe3ORF6780P (99% identity) | CCTC | M1.Hpyfe49ORF6980P |
| 6985 | M | M1.HpyME02IX (97% identity) | CCTC | M2.Hpyfe49ORF6980P |
| 6990 | agmatine deiminase | |||
| 7035 | DNA methyltransferase | |||
| 7040 | R | HpyK025VIIP (98% identity) | GANTC | Hpyfe49ORF7045P |
| 7045 | M | M.HpyNP09X (99% identity) | GANTC | M.Hpyfe49ORF7045P |
| 7050 | 171 aa hypothetical protein | |||
| 7055 | 180 aa hypothetical protein | |||
| 7060 | RM | HpyQ35ORFXP (62% identity) | Hpyfe49ORF7060P | |
| 7065 | carboxylating nicotinate-nucleotide | |||
| 7115 | copper response regulator transcription factor | |||
| 7120 | R | HpyK027VP (98% identity) | GAAGA | Hpyfe49ORF7125P |
| 7125 | M | M2.HpyJ017II (98% identity) | GAAGA | M1.Hpyfe49ORF7125P |
| 7130 | M | M2.Hpyfe124ORF6895P (100% identity) | GAAGA | M2.Hpyfe49ORF7125P |
| 7135 | site-specific DNA-methyltransferase | |||
| 7605 | 145 aa hypothetical protein | |||
| 7610 | R | HpyC208XIP (100% identity) | TGCA | Hpyfe49ORF7615P |
| 7615 | M | M.HpyTW10VII (99% identity) | TGCA | M.Hpyfe49ORF7615P |
| 7620 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyHP22ORF2795P (95% identity) | M.Hpyfe49ORF40P | |
| 50 | R | HpyTW04ORF7140P (97% identity) | Hpyfe49ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | HpySG18XVIIIP (91% identity) | Hpyfe49ORF625P | |
| 625 | M | M.HpyMM11ORF6520P (93% identity) | M.Hpyfe49ORF625P | |
| 630 | DNA/RNA non-specific endonuclease | |||
| 4500 | 145 aa hypothetical protein | |||
| 4505 | R | Hpyfe49ORF7135P (99% identity) | Hpyfe49ORF4510P | |
| 4510 | M | M.Hpyfe49ORF7135P (100% identity) | M.Hpyfe49ORF4510P | |
| 4515 | ABC transporter permease/substrate-binding | |||
| 7130 | site-specific DNA-methyltransferase | |||
| 7135 | M | M.Hpyfe49ORF4510P (100% identity) | M.Hpyfe49ORF7135P | |
| 7140 | R | Hpyfe49ORF4510P (99% identity) | Hpyfe49ORF7135P | |
| 7145 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2910 | type I glutamate--ammonia ligase | |||
| 2915 | R | Hpyfe3GmrSD2P (93% identity) | Hpyfe49GmrSD2P | |
| 2920 | 50S ribosomal protein L9 | |||
| 3495 | sel1 repeat family protein | |||
| 3500 | R | HpySG19GmrSD2P (95% identity) | Hpyfe49GmrSDP | |
| 3505 | NAD(P)H-dependent oxidoreductase | |||