Helicobacter pylori Hpfe051 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe051 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,616,176 bp
GenBank #: CP094132
REBASE acronym: Hpyfe51
Org_num: 57298
All begin MPG57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4360 | outer membrane beta-barrel protein HofF | |||
| 4365 | S | S.Hpyfe51ORF4665P (97% identity) | CAYNNNNNNTTG | S.Hpyfe51ORF4365P |
| 4370 | cadmium-translocating P-type ATPase | |||
| 4650 | hydroxyethylthiazole kinase | |||
| 4655 | R | Hpyfe102ORF3145P (97% identity) | CAYNNNNNNNTTG | Hpyfe51ORF4665P |
| 4660 | S | S.Hpyfe51ORF4365P (97% identity) | CAYNNNNNNNTTG | S.Hpyfe51ORF4665P |
| 4665 | M | M.Hpyfe99ORF4915P (97% identity) | CAYNNNNNNNTTG | M.Hpyfe51ORF4665P |
| 4670 | phosphatase PAP2 family protein | |||
| 7715 | M48 family metallopeptidase | |||
| 7720 | R | Hpyfe74ORF7605P (96% identity) | CRTANNNNNNNTC | Hpyfe51ORF7725P |
| 7725 | M | M.HpyMA08V (97% identity) | CRTANNNNNNNTC | M.Hpyfe51ORF7725P |
| 7730 | S | S.HpyUM032XII (97% identity) | CRTANNNNNNNTC | S.Hpyfe51ORF7725P |
| 7735 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyCHN5ORF7445P (58% identity) | Hpyfe51ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | Hpybs3ORFZP (98% identity) | CYANNNNNNTTC | Hpyfe51ORF270P |
| 275 | S | S.HpyCOL121ORF7195P (96% identity) | CYANNNNNNTTC | S.Hpyfe51ORF270P |
| 280 | DNA polymerase I | |||
| 325 | addiction module antidote protein | |||
| 330 | M | M1.Hpyfe95ORF370P (99% identity) | M1.Hpyfe51ORF330P | |
| 335 | M | M2.HpyMA23ORF6875P (100% identity) | M2.Hpyfe51ORF330P | |
| 340 | R | HpyMA23ORF6875P (98% identity) | Hpyfe51ORF330P | |
| 345 | cytochrome-c peroxidase | |||
| 1425 | IceA2 protein | |||
| 1430 | M | M.Hpyfe71ORF1405P (98% identity) | CATG | M.Hpyfe51ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.Hpyfe48ORF1855P (99% identity) | GCGC | M.Hpyfe51ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | HpyMA08ORF5065P (99% identity) | TCNNGA | Hpyfe51ORF2055P |
| 2055 | M | M.Hpyfe123ORF2045P (99% identity) | TCNNGA | M.Hpyfe51ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.HpyK021VII (98% identity) | GTNNAC | M.Hpyfe51ORF2720P |
| 2725 | R | Hpyfe6ORF2680P (95% identity) | GTNNAC | Hpyfe51ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 2935 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2940 | M | M.HpyHP76VIII (98% identity) | GTAC | M.Hpyfe51ORF2940P |
| 2945 | R | Hpyfe7ORF4690P (97% identity) | GTAC | Hpyfe51ORF2940P |
| 2950 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3715 | 3-5 exonuclease | |||
| 3720 | R | HpySG14IIIP (99% identity) | CCNNGG | Hpyfe51ORF3725P |
| 3725 | M | M.HpyMA05VII (100% identity) | CCNNGG | M.Hpyfe51ORF3725P |
| 3730 | 3-5 exonuclease | |||
| 3815 | 453 aa hypothetical protein | |||
| 3820 | RM | Hpy256ORFBP (75% identity) | Hpyfe51ORF3820P | |
| 3825 | (Fe-S)-binding protein | |||
| 4825 | 54 aa hypothetical protein | |||
| 4830 | R | HpyTW17ORF2315P (99% identity) | ACGT | Hpyfe51ORF4835P |
| 4835 | M | M.HpyJ022ORF2400P (98% identity) | ACGT | M.Hpyfe51ORF4835P |
| 4840 | GIY-YIG nuclease family protein | |||
| 4835 | DNA cytosine methyltransferase | |||
| 4840 | R | Hpy1681ORFRP (93% identity) | ACNGT | Hpyfe51ORF4845P |
| 4845 | M | M.Hpyfe118ORF4995P (98% identity) | ACNGT | M.Hpyfe51ORF4845P |
| 4850 | translational GTPase TypA | |||
| 4855 | lipopolysaccharide heptosyltransferase family | |||
| 4860 | M | M.Hpyfe52ORF4775P (98% identity) | ATTAAT | M.Hpyfe51ORF4860P |
| 4865 | Hop family outer membrane protein HopJ/HopK | |||
| 5530 | site-specific integrase | |||
| 5535 | M | M.HpyMA12ORF4940P (84% identity) | M.Hpyfe51ORF5535P | |
| 5540 | translation elongation factor 4 | |||
| 5975 | AAA family ATPase | |||
| 5980 | M | M.Hpyfe70ORF5880P (99% identity) | CCGG | M.Hpyfe51ORF5980P |
| 5985 | R | HpyCHN8IVP (90% identity) | CCGG | Hpyfe51ORF5980P |
| 5990 | 204 aa hypothetical protein | |||
| 5990 | 204 aa hypothetical protein | |||
| 5995 | M | M.HpyTW05XIV (99% identity) | TCGA | M.Hpyfe51ORF5995P |
| 6000 | exodeoxyribonuclease VII large subunit | |||
| 6805 | alpha-1,2-fucosyltransferase | |||
| 6810 | M | M.Hpy271ORFQP (98% identity) | GATC | M.Hpyfe51ORF6810P |
| 6815 | 347 aa hypothetical protein | |||
| 7010 | DNA cytosine methyltransferase | |||
| 7015 | R | Hpyfe63ORF7605P (97% identity) | CCTC | Hpyfe51ORF7020P |
| 7020 | M | M1.Hpyfe3ORF6780P (98% identity) | CCTC | M1.Hpyfe51ORF7020P |
| 7025 | M | M2.Hpyfe29ORF6800P (98% identity) | CCTC | M2.Hpyfe51ORF7020P |
| 7030 | agmatine deiminase family protein | |||
| 7075 | DNA methyltransferase | |||
| 7080 | RM | Hpyfe22ORF7040P (93% identity) | Hpyfe51ORF7080P | |
| 7085 | carboxylating nicotinate-nucleotide | |||
| 7135 | copper response regulator transcription factor | |||
| 7140 | R | Hpyfe86ORF7035P (99% identity) | GAAGA | Hpyfe51ORF7145P |
| 7145 | M | M1.Hpyfe86ORF7035P (100% identity) | GAAGA | M1.Hpyfe51ORF7145P |
| 7150 | M | M2.Hpyfe78ORF7125P (100% identity) | GAAGA | M2.Hpyfe51ORF7145P |
| 7155 | site-specific DNA-methyltransferase | |||
| 7605 | DUF5343 domain-containing protein | |||
| 7610 | M | M.HpyK117ORF7445P (99% identity) | M.Hpyfe51ORF7610P | |
| 7615 | type II restriction endonuclease | |||
| 7610 | DNA cytosine methyltransferase | |||
| 7615 | R | Hpyfe83ORF7430P (99% identity) | TGCA | Hpyfe51ORF7620P |
| 7620 | M | M.HpyF211ORF1463P (99% identity) | TGCA | M.Hpyfe51ORF7620P |
| 7625 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe76ORF40P (97% identity) | M.Hpyfe51ORF40P | |
| 45 | R | HpyMA06ORF7425P (97% identity) | Hpyfe51ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 645 | type III restriction endonuclease subunit R | |||
| 650 | R | Hpyfe77ORF610P (96% identity) | Hpyfe51ORF655P | |
| 655 | M | M.HpySG38ORF580P (97% identity) | M.Hpyfe51ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| 7150 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyOK88ORFNP (97% identity) | M.Hpyfe51ORF7155P | |
| 7160 | R | Hpybs1ORFLP (96% identity) | Hpyfe51ORF7155P | |
| 7165 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | type I glutamate--ammonia ligase | |||
| 2985 | R | Hpyfe123GmrSDP (89% identity) | Hpyfe51GmrSD2P | |
| 2990 | 50S ribosomal protein L9 | |||
| 3560 | sel1 repeat family protein | |||
| 3565 | R | HpyMA21GmrSD2P (97% identity) | Hpyfe51GmrSDP | |
| 3570 | NAD(P)H-dependent oxidoreductase | |||