Helicobacter pylori Hpfe052 |
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Putative Helicobacter pylori Hpfe052 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,560,058 bp
GenBank #: CP094131
REBASE acronym: Hpyfe52
Org_num: 57299
All begin MPG30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4280 | outer membrane beta-barrel protein HofF | |||
| 4285 | S | S.HpyUM038ORF5090P (70% identity) | AACNNNNNNTTC | S.Hpyfe52ORF4285P |
| 4290 | cadmium-translocating P-type ATPase | |||
| 4580 | hydroxyethylthiazole kinase | |||
| 4585 | R | Hpyfe103ORF4610P (97% identity) | CTANNNNNNNGTT | Hpyfe52ORF4595P |
| 4590 | S | S.Hpyfe59ORF4370P (96% identity) | CTANNNNNNNGTT | S.Hpyfe52ORF4595P |
| 4595 | M | M.HpyCHN4IX (97% identity) | CTANNNNNNNGTT | M.Hpyfe52ORF4595P |
| 4600 | phosphatase PAP2 family protein | |||
| 7420 | M48 family metallopeptidase | |||
| 7425 | R | HpySG32XIVP (91% identity) | Hpyfe52ORF7430P | |
| 7430 | M | M.HpyK116IV (97% identity) | M.Hpyfe52ORF7430P | |
| 7435 | S | S.HpyK006ORF7205P (45% identity) | S.Hpyfe52ORF7430P | |
| 7440 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe54ORF60P (93% identity) | Hpyfe52ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | HpyID2ORF6760P (97% identity) | CYANNNNNNTTC | Hpyfe52ORF265P |
| 270 | S | S1.Hpyfe4ORF265P (98% identity) | S1.Hpyfe52ORF265P | |
| 275 | S | S1.HpyK119ORF6970P (91% identity) | S2.Hpyfe52ORF265P | |
| 280 | DNA polymerase I | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | Hpyfe1ORF1590P (97% identity) | CATG | Hpyfe52ORF1425P |
| 1425 | M | M.HpyOK95ORFUP (98% identity) | CATG | M.Hpyfe52ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.Hpyfe107ORF6245P (98% identity) | GCGC | M.Hpyfe52ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | HpySP706XIIIP (100% identity) | TCNNGA | Hpyfe52ORF2065P |
| 2065 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe52ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.Hpy422ORF4775P (98% identity) | GTNNAC | M.Hpyfe52ORF2715P |
| 2720 | R | Hpyfe71ORF2860P (98% identity) | GTNNAC | Hpyfe52ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 2910 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2915 | M | M.Hpyfe71ORF3060P (99% identity) | GTAC | M.Hpyfe52ORF2915P |
| 2920 | R | HpyJA103VIP (99% identity) | GTAC | Hpyfe52ORF2915P |
| 2925 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4750 | catalase | |||
| 4755 | R | Hpyfe113ORF5855P (99% identity) | ACGT | Hpyfe52ORF4760P |
| 4760 | M | M.HpyK046ORF2270P (99% identity) | ACGT | M.Hpyfe52ORF4760P |
| 4765 | translational GTPase TypA | |||
| 4770 | lipopolysaccharide heptosyltransferase family | |||
| 4775 | M | M.HpyGC26ORFEP (98% identity) | ATTAAT | M.Hpyfe52ORF4775P |
| 4780 | Hop family outer membrane protein HopJ/HopK | |||
| 5495 | 128 aa hypothetical protein | |||
| 5500 | M | M.Hpyfe1ORF5730P (99% identity) | CTNAG | M.Hpyfe52ORF5500P |
| 5505 | R | Hpyfe24ORF5680P (98% identity) | CTNAG | Hpyfe52ORF5500P |
| 5510 | polysaccharide deacetylase | |||
| 5740 | AAA family ATPase | |||
| 5745 | M | M.Hpyfe76ORF5755P (99% identity) | CCGG | M.Hpyfe52ORF5745P |
| 5750 | R | HpyJ015IVP (97% identity) | CCGG | Hpyfe52ORF5745P |
| 5755 | 123 aa hypothetical protein | |||
| 5755 | 123 aa hypothetical protein | |||
| 5760 | M | M.Hpyfe24ORF5940P (99% identity) | TCGA | M.Hpyfe52ORF5760P |
| 5765 | exodeoxyribonuclease VII large subunit | |||
| 6565 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6570 | M | M.Hpybs3ORFGP (96% identity) | GATC | M.Hpyfe52ORF6570P |
| 6575 | R | HpyBT112ORF6550P (94% identity) | GATC | Hpyfe52ORF6570P |
| 6585 | ACP S-malonyltransferase | |||
| 6750 | sodium/proline symporter PutP | |||
| 6755 | M | M1.Hpyfe60ORF6945P (99% identity) | M1.Hpyfe52ORF6755P | |
| 6760 | M | M1.HpyK118V (99% identity) | CCTC | M2.Hpyfe52ORF6755P |
| 6765 | agmatine deiminase | |||
| 6810 | DNA methyltransferase | |||
| ??? | RM | Hpyfe52ORF6820P (100% identity) | Hpyfe52ORF6815P | |
| 6825 | carboxylating nicotinate-nucleotide | |||
| 6810 | DNA methyltransferase | |||
| ??? | RM | Hpyfe52ORF6815P (100% identity) | GGWTAA | Hpyfe52ORF6820P |
| 6825 | carboxylating nicotinate-nucleotide | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy444A6ORFCP (96% identity) | M.Hpyfe52ORF40P | |
| 50 | R | HpyOK34ORFHP (97% identity) | Hpyfe52ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 620 | biotin synthase | |||
| 625 | R | HpyK93ORF660P (96% identity) | Hpyfe52ORF630P | |
| 630 | M | M.Hpyfe103ORF630P (97% identity) | M.Hpyfe52ORF630P | |
| 635 | IS607-like element IS607 family transposase | |||
| 6875 | copper response regulator transcription factor | |||
| ??? | M | M.HpyK112ORF200P (97% identity) | M.Hpyfe52ORF6880P | |
| 6885 | R | Hpybs3ORFXP (96% identity) | Hpyfe52ORF6880P | |
| 6890 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2955 | type I glutamate--ammonia ligase | |||
| 2960 | R | HpyP90GmrSD2P (91% identity) | Hpyfe52GmrSDP | |
| 2965 | 50S ribosomal protein L9 | |||
| 3535 | sel1 repeat family protein | |||
| 3540 | R | Hpyfe48GmrSD2P (96% identity) | Hpyfe52GmrSD2P | |
| 3545 | NAD(P)H-dependent oxidoreductase | |||