Helicobacter pylori Hpfe053 |
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Putative Helicobacter pylori Hpfe053 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,617,070 bp
GenBank #: CP094130
REBASE acronym: Hpyfe53
Org_num: 57300
All begin MPF99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5 | outer membrane beta-barrel protein HofF | |||
| 10 | S | S.HpyU011ORF2970P (96% identity) | CCANNNNNNNTTG | S.Hpyfe53ORF10P |
| 15 | cadmium-translocating P-type ATPase | |||
| 290 | hydroxyethylthiazole kinase | |||
| 295 | R | Hpyfe11ORF5225P (94% identity) | CAYNNNNNNTGT | Hpyfe53ORF305P |
| 300 | S | S.HpyIS4XIII (78% identity) | CAYNNNNNNTGT | S.Hpyfe53ORF305P |
| 305 | M | M.Hpyfe118ORF3210P (97% identity) | CAYNNNNNNTGT | M.Hpyfe53ORF305P |
| 310 | phosphatase PAP2 family protein | |||
| 3520 | FAD-dependent thymidylate synthase | |||
| 3525 | S | S.HpyK117ORF7345P (98% identity) | CRTANNNNNNNTC | S.Hpyfe53ORF3535P |
| 3530 | CAAX protease | |||
| 3535 | M | M.HpyAR8VII (97% identity) | CRTANNNNNNNTC | M.Hpyfe53ORF3535P |
| 3540 | R | Hpyfe74ORF7605P (96% identity) | CRTANNNNNNNTC | Hpyfe53ORF3535P |
| 3545 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 570 | flagellar hook protein FlgE | |||
| 575 | R | HpyGU83AORFCP (94% identity) | GTNNAC | Hpyfe53ORF580P |
| 580 | M | M.Hpyfe83ORF2705P (96% identity) | GTNNAC | M.Hpyfe53ORF580P |
| 585 | ATP-dependent helicase | |||
| 1235 | acetyl-CoA carboxylase biotin carboxylase | |||
| 1240 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe53ORF1240P |
| 1245 | R | HpyMA05ORF5200P (100% identity) | TCNNGA | Hpyfe53ORF1240P |
| 1250 | Laminin subunit alpha-2 precursor | |||
| 1415 | 144 aa hypothetical protein | |||
| 1420 | M | M.HpyF94ORF182P (99% identity) | GCGC | M.Hpyfe53ORF1420P |
| 1425 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | HAD family hydrolase | |||
| 1885 | M | M.HpyK109I (98% identity) | CATG | M.Hpyfe53ORF1885P |
| 1890 | R | Hpy928ORFVP (89% identity) | CATG | Hpyfe53ORF1885P |
| 1895 | serine O-acetyltransferase | |||
| 3210 | DNA polymerase I | |||
| 3215 | S | S.HpyV002ORF7115P (88% identity) | S.Hpyfe53ORF3220P | |
| 3220 | M | M.Hpyfe114ORF270P (98% identity) | M.Hpyfe53ORF3220P | |
| 3225 | R | Hpyfe127ORF340P (98% identity) | Hpyfe53ORF3220P | |
| 3230 | VRR-NUC domain-containing protein | |||
| 3360 | LptF/LptG family permease | |||
| 3365 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M1.Hpyfe53ORF3365P |
| 3370 | M | M2.HpyV004III (93% identity) | CCATC | M2.Hpyfe53ORF3365P |
| 3375 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe53ORF3365P |
| 3380 | outer membrane protein | |||
| 3445 | transcription termination factor NusA | |||
| 3450 | RM | HpyP110ORF6880P (89% identity) | Hpyfe53ORF3450P | |
| 3455 | type III restriction-modification system | |||
| 3630 | 67 aa hypothetical protein | |||
| 3635 | M | M.HpyID2VIII (99% identity) | TGCA | M.Hpyfe53ORF3635P |
| 3640 | R | Hpyfe7ORF7395P (98% identity) | TGCA | Hpyfe53ORF3635P |
| 3645 | 50 aa hypothetical protein | |||
| 4170 | DNA methyltransferase | |||
| 4175 | M | M.HpySG24VI (99% identity) | GANTC | M.Hpyfe53ORF4175P |
| 4180 | R | HpyGU71CORFHP (97% identity) | GANTC | Hpyfe53ORF4175P |
| 4185 | DNA methyltransferase | |||
| 4225 | TerC family protein | |||
| 4230 | M | M2.Hpyfe106ORF6925P (98% identity) | CCTC | M1.Hpyfe53ORF4230P |
| 4235 | M | M2.HpyV009VIP (93% identity) | M2.Hpyfe53ORF4230P | |
| 4240 | sodium/proline symporter PutP | |||
| 4435 | HTH domain-containing protein | |||
| 4440 | M | M.Hpy120ORF470P (97% identity) | GATC | M.Hpyfe53ORF4440P |
| 4445 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 5255 | exodeoxyribonuclease VII large subunit | |||
| 5260 | R | HpyTW03VP (96% identity) | CCGG | Hpyfe53ORF5265P |
| 5265 | M | M.HpyCHN4III (99% identity) | CCGG | M.Hpyfe53ORF5265P |
| 5270 | AAA family ATPase | |||
| 5500 | polysaccharide deacetylase | |||
| 5505 | R | Hpyfe6ORF5470P (98% identity) | CTNAG | Hpyfe53ORF5510P |
| 5510 | M | M.HpyK116VI (98% identity) | CTNAG | M.Hpyfe53ORF5510P |
| 5515 | 125 aa hypothetical protein | |||
| 6225 | Hop family outer membrane protein HopJ/HopK | |||
| 6230 | M | M.HpyMA18V (97% identity) | ATTAAT | M.Hpyfe53ORF6230P |
| 6235 | lipopolysaccharide heptosyltransferase family | |||
| 6240 | translational GTPase TypA | |||
| 6245 | M | M.Hpyfe2ORF4945P (99% identity) | ACGT | M.Hpyfe53ORF6245P |
| 6250 | R | HpyMA08ORF2320P (99% identity) | ACGT | Hpyfe53ORF6245P |
| 6255 | catalase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2670 | ABC transporter ATP-binding protein/permease | |||
| 2675 | M | M.HpyK035ORF6570P (71% identity) | M.Hpyfe53ORF2675P | |
| 2680 | relaxase/mobilization nuclease domain-containing | |||
| 2865 | integrase | |||
| 2870 | M | M.HpyIS7ORF6480P (25% identity) | M.Hpyfe53ORF2870P | |
| 2875 | R | Hpyfe92ORF650P (93% identity) | Hpyfe53ORF2870P | |
| 2880 | type III restriction endonuclease subunit R | |||
| 3450 | class I SAM-dependent DNA methyltransferase | |||
| 3455 | R | Hpy274ORF1706P (97% identity) | Hpyfe53ORF3460P | |
| ??? | M | M.HpyP30ORFDP (96% identity) | M.Hpyfe53ORF3460P | |
| 3470 | ATP-dependent DNA helicase RecG | |||
| 4090 | rod shape-determining protein MreC | |||
| 4095 | R | Hpyfe68ORF6895P (95% identity) | Hpyfe53ORF4105P | |
| 4100 | 46 aa hypothetical protein | |||
| 4105 | M | M.Hpyfe3ORF6920P (92% identity) | M.Hpyfe53ORF4105P | |
| 4110 | copper response regulator transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6380 | type I glutamate--ammonia ligase | |||
| 6385 | R | HpyJA102GmrSDP (86% identity) | Hpyfe53GmrSD2P | |
| 6390 | 50S ribosomal protein L9 | |||
| 6960 | sel1 repeat family protein | |||
| 6965 | R | HpyJSHR6GmrSDP (96% identity) | Hpyfe53GmrSDP | |
| 6970 | NAD(P)H-dependent oxidoreductase | |||