Helicobacter pylori Hpfe054 |
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Putative Helicobacter pylori Hpfe054 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,563,078 bp
GenBank #: CP094129
REBASE acronym: Hpyfe54
Org_num: 57301
All begin MPG85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3020 | DNA cytosine methyltransferase | |||
| 3025 | M | M.HpyMA18ORF4320P (96% identity) | M.Hpyfe54ORF3025P | |
| 3030 | S | S.Hpyfe35ORF3120P (97% identity) | S.Hpyfe54ORF3025P | |
| 3035 | R | HpyUM023ORF5765P (96% identity) | Hpyfe54ORF3025P | |
| 3040 | hydroxyethylthiazole kinase | |||
| 7500 | M48 family metallopeptidase | |||
| 7505 | R | Hpyfe5ORF7635P (100% identity) | CRTANNNNNNNTG | Hpyfe54ORF7510P |
| 7510 | M | M.Hpyfe5ORF7635P (100% identity) | CRTANNNNNNNTG | M.Hpyfe54ORF7510P |
| 7515 | CAAX protease | |||
| 7520 | S | S.Hpy66ORF85P (97% identity) | CRTANNNNNNNTG | S.Hpyfe54ORF7510P |
| 7525 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 712 aa hypothetical protein | |||
| 60 | RM | HpyHPYORF55P (90% identity) | Hpyfe54ORF60P | |
| 65 | transcription termination factor NusA | |||
| 135 | outer membrane protein | |||
| 140 | R | Hpyfe5ORF140P (100% identity) | CCATC | Hpyfe54ORF145P |
| 145 | M | M1.HpyC1IMORFAP (94% identity) | CCATC | M1.Hpyfe54ORF145P |
| 150 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M2.Hpyfe54ORF145P |
| 155 | LptF/LptG family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | Hpyfe5ORF280P (99% identity) | CYANNNNNNTTC | Hpyfe54ORF285P |
| 290 | S | S.Hpy32ORF1359P (97% identity) | S.Hpyfe54ORF285P | |
| 295 | DNA polymerase I | |||
| 1425 | IceA2 protein | |||
| 1430 | M | M.Hpyfe5ORF1425P (100% identity) | CATG | M.Hpyfe54ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1880 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1885 | M | M.Hpyfe5ORF1885P (100% identity) | GCGC | M.Hpyfe54ORF1885P |
| 1890 | 144 aa hypothetical protein | |||
| 2065 | Laminin subunit alpha-2 precursor | |||
| 2070 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe54ORF2075P |
| 2075 | M | M.Hpyfe5ORF2080P (100% identity) | TCNNGA | M.Hpyfe54ORF2075P |
| 2080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2740 | ATP-dependent helicase | |||
| 2745 | M | M.Hpyfe2ORF2675P (98% identity) | GTNNAC | M.Hpyfe54ORF2745P |
| 2750 | R | Hpyfe35ORF2845P (96% identity) | GTNNAC | Hpyfe54ORF2745P |
| 2755 | flagellar hook protein FlgE | |||
| 3010 | phosphatase PAP2 family protein | |||
| 3015 | R | HpyK009ORF2475P (97% identity) | GGCC | Hpyfe54ORF3020P |
| 3020 | M | M.Hpyfe5ORF3190P (99% identity) | GGCC | M.Hpyfe54ORF3020P |
| 3025 | type I restriction-modification system subunit | |||
| 3885 | outer membrane protein | |||
| 3890 | RM | Hpyfe125ORF3670P (83% identity) | Hpyfe54ORF3890P | |
| 3895 | (Fe-S)-binding protein | |||
| 4800 | catalase | |||
| 4805 | R | Hpyfe5ORF4970P (100% identity) | ACGT | Hpyfe54ORF4810P |
| 4810 | M | M.Hpyfe5ORF4970P (100% identity) | ACGT | M.Hpyfe54ORF4810P |
| 4815 | translational GTPase TypA | |||
| 4820 | lipopolysaccharide heptosyltransferase family | |||
| 4825 | M | M.Hpyfe5ORF4985P (100% identity) | ATTAAT | M.Hpyfe54ORF4825P |
| 4830 | Hop family outer membrane protein HopJ/HopK | |||
| 5535 | 128 aa hypothetical protein | |||
| 5540 | M | M.Hpyfe5ORF5695P (100% identity) | CTNAG | M.Hpyfe54ORF5540P |
| 5545 | R | Hpyfe5ORF5695P (100% identity) | CTNAG | Hpyfe54ORF5540P |
| 5550 | polysaccharide deacetylase | |||
| 5780 | AAA family ATPase | |||
| 5785 | M | M.Hpy193ORFEP (99% identity) | CCGG | M.Hpyfe54ORF5785P |
| 5790 | R | Hpyfe5ORF5940P (100% identity) | CCGG | Hpyfe54ORF5785P |
| 5795 | 204 aa hypothetical protein | |||
| 5795 | 204 aa hypothetical protein | |||
| 5800 | M | M.Hpyfe5ORF5955P (98% identity) | TCGA | M.Hpyfe54ORF5800P |
| 5805 | exodeoxyribonuclease VII large subunit | |||
| 6610 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6615 | M | M.Hpyfe5ORF6755P (100% identity) | GATC | M.Hpyfe54ORF6615P |
| 6620 | R | Hpyfe5ORF6755P (100% identity) | GATC | Hpyfe54ORF6615P |
| 6630 | ACP S-malonyltransferase | |||
| 6805 | sodium/proline symporter PutP | |||
| 6810 | M | M.Hpyfe6ORF6715P (99% identity) | CCTTC | M.Hpyfe54ORF6810P |
| 6815 | R | HpyTW05VIIIP (98% identity) | CCTTC | Hpyfe54ORF6810P |
| 6820 | HNH endonuclease | |||
| 6815 | restriction endonuclease | |||
| 6820 | R | HpyK004XIIP (96% identity) | CCTC | Hpyfe54ORF6825P |
| 6825 | M | M2.HpyK041VIIP (98% identity) | CCTC | M1.Hpyfe54ORF6825P |
| 6830 | M | M2.Hpyfe100ORF6785P (99% identity) | CCTC | M2.Hpyfe54ORF6825P |
| 6835 | agmatine deiminase | |||
| 6880 | DNA methyltransferase | |||
| 6885 | R | Hpyfe5ORF7015P (100% identity) | GANTC | Hpyfe54ORF6890P |
| 6890 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.Hpyfe54ORF6890P |
| 6895 | N-6 DNA methylase | |||
| 6890 | site-specific DNA-methyltransferase | |||
| 6895 | RM | HpyK053ORF270P (92% identity) | Hpyfe54ORF6895P | |
| 6900 | carboxylating nicotinate-nucleotide | |||
| 7410 | 103 aa hypothetical protein | |||
| 7415 | R | HpyID8XIVP (97% identity) | TGCA | Hpyfe54ORF7420P |
| 7420 | M | M.HpyOK304ORFJP (98% identity) | TGCA | M.Hpyfe54ORF7420P |
| 7425 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe5ORF40P (99% identity) | M.Hpyfe54ORF40P | |
| 50 | R | Hpyfe5ORF40P (99% identity) | Hpyfe54ORF40P | |
| 55 | 712 aa hypothetical protein | |||
| 645 | biotin synthase | |||
| 650 | R | Hpyfe5ORF645P (99% identity) | Hpyfe54ORF655P | |
| 655 | M | M.HpyK109ORF6600P (98% identity) | M.Hpyfe54ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4070 | NAD(P)H-dependent oxidoreductase | |||
| 4075 | R | HpyJA101GmrSD2P (96% identity) | Hpyfe54GmrSD2P | |
| 4080 | sel1 repeat family protein | |||
| 4655 | 50S ribosomal protein L9 | |||
| 4660 | R | Hpyfe5GmrSDP (99% identity) | Hpyfe54GmrSDP | |
| 4665 | type I glutamate--ammonia ligase | |||