Helicobacter pylori Hpfe055 |
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Putative Helicobacter pylori Hpfe055 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,572,908 bp
GenBank #: CP094128
REBASE acronym: Hpyfe55
Org_num: 57302
All begin MPG79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4315 | outer membrane beta-barrel protein HofF | |||
| 4320 | S | S.HpyCOL120ORF3330P (96% identity) | CTANNNNNNNNTTG | S.Hpyfe55ORF4320P |
| 4325 | cadmium-translocating P-type ATPase | |||
| 4625 | hydroxyethylthiazole kinase | |||
| 4630 | R | Hpyfe89ORF4905P (97% identity) | Hpyfe55ORF4640P | |
| 4635 | S | S.HpyPE121ORF2955P (94% identity) | S.Hpyfe55ORF4640P | |
| 4640 | M | M.HpyK112IV (96% identity) | M.Hpyfe55ORF4640P | |
| 4645 | phosphatase PAP2 family protein | |||
| 7525 | M48 family metallopeptidase | |||
| 7530 | R | Hpyfe23ORF7685P (96% identity) | CRTANNNNNNNTC | Hpyfe55ORF7535P |
| 7535 | M | M.HpyK023ORF7235P (96% identity) | CRTANNNNNNNTC | M.Hpyfe55ORF7535P |
| 7540 | S | S.Hpy199ORFDP (95% identity) | CRTANNNNNNNTC | S.Hpyfe55ORF7535P |
| 7545 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyJ019XIII (84% identity) | Hpyfe55ORF55P | |
| 60 | 95 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | HpyU425IIIP (98% identity) | CCATC | Hpyfe55ORF155P |
| 155 | M | M1.Hpyfe19ORF135P (100% identity) | CCATC | M1.Hpyfe55ORF155P |
| 160 | M | M1.HpyU123V (99% identity) | CCATC | M2.Hpyfe55ORF155P |
| 165 | LptF/LptG family permease | |||
| 290 | ComF family protein | |||
| 295 | RM | Hpy1100ORFQP (99% identity) | CYANNNNNNTTC | Hpyfe55ORF295P |
| 300 | S | S1.HpyJA101ORF6920P (93% identity) | S.Hpyfe55ORF295P | |
| 305 | restriction endonuclease subunit S | |||
| 1420 | serine O-acetyltransferase | |||
| 1425 | R | Hpyfe113ORF1575P (98% identity) | CATG | Hpyfe55ORF1430P |
| 1430 | M | M.HpyHP22ORF4195P (99% identity) | CATG | M.Hpyfe55ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1885 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1890 | M | M.HpySG26XII (97% identity) | GCGC | M.Hpyfe55ORF1890P |
| 1895 | 144 aa hypothetical protein | |||
| 2065 | Laminin subunit alpha-2 precursor | |||
| 2070 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe55ORF2075P |
| 2075 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.Hpyfe55ORF2075P |
| 2080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2720 | ATP-dependent helicase | |||
| 2725 | M | M.HpyUM111ORF7085P (97% identity) | GTNNAC | M.Hpyfe55ORF2725P |
| 2730 | R | HpyOK304ORFXP (98% identity) | GTNNAC | Hpyfe55ORF2725P |
| 2735 | flagellar hook protein FlgE | |||
| 2920 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2925 | M | M.Hpybs1ORFEP (94% identity) | GTAC | M.Hpyfe55ORF2925P |
| 2930 | R | Hpy1867AORF8580P (96% identity) | GTAC | Hpyfe55ORF2925P |
| 2935 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3750 | (Fe-S)-binding protein | |||
| 3755 | RM | Hpyfe127ORF3950P (91% identity) | Hpyfe55ORF3755P | |
| 3760 | outer membrane protein | |||
| 3830 | 3-5 exonuclease | |||
| 3835 | M | M.Hpyfe122ORF3700P (100% identity) | CCNNGG | M.Hpyfe55ORF3835P |
| 3840 | R | Hpyfe65ORF3785P (98% identity) | CCNNGG | Hpyfe55ORF3835P |
| 3845 | 3-5 exonuclease | |||
| 4470 | osmoprotection protein | |||
| 4475 | R | Hpyfe78ORF3885P (99% identity) | CGWCG | Hpyfe55ORF4480P |
| 4480 | M | M.Hpyfe8ORF2470P (100% identity) | CGWCG | M.Hpyfe55ORF4480P |
| 4485 | ABC transporter permease/substrate-binding | |||
| 4790 | catalase | |||
| 4795 | R | HpyK051ORF2560P (99% identity) | ACNGT | Hpyfe55ORF4800P |
| 4800 | M | M.HpyNP07II (99% identity) | ACNGT | M.Hpyfe55ORF4800P |
| 4805 | translational GTPase TypA | |||
| 4810 | lipopolysaccharide heptosyltransferase family | |||
| 4815 | M | M.HpyMA23IV (98% identity) | ATTAAT | M.Hpyfe55ORF4815P |
| 4820 | Hop family outer membrane protein HopJ/HopK | |||
| 5520 | 122 aa hypothetical protein | |||
| 5525 | M | M.HpyUM085ORF755P (99% identity) | CTNAG | M.Hpyfe55ORF5525P |
| 5530 | R | Hpyfe13ORF5700P (94% identity) | CTNAG | Hpyfe55ORF5525P |
| 5535 | polysaccharide deacetylase | |||
| 5765 | AAA family ATPase | |||
| 5770 | M | M.HpySG04IV (91% identity) | M.Hpyfe55ORF5770P | |
| 5775 | R | HpyJ015IVP (90% identity) | Hpyfe55ORF5770P | |
| 5780 | 204 aa hypothetical protein | |||
| 5780 | 204 aa hypothetical protein | |||
| 5785 | M | M.Hpyfe40ORF5780P (99% identity) | TCGA | M.Hpyfe55ORF5785P |
| 5790 | exodeoxyribonuclease VII large subunit | |||
| 6580 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6585 | M | M.HpyK112VIII (97% identity) | GATC | M.Hpyfe55ORF6585P |
| 6590 | R | HpyJF13ORF148P (96% identity) | GATC | Hpyfe55ORF6585P |
| 6600 | ACP S-malonyltransferase | |||
| 6790 | DNA cytosine methyltransferase | |||
| 6795 | R | Hpyfe63ORF7595P (99% identity) | GTSAC | Hpyfe55ORF6800P |
| 6800 | M | M.Hpyfe96ORF6875P (100% identity) | GTSAC | M.Hpyfe55ORF6800P |
| 6805 | HNH endonuclease | |||
| 6800 | site-specific DNA-methyltransferase | |||
| 6805 | R | HpyOK304ORFQP (95% identity) | CCTC | Hpyfe55ORF6810P |
| 6810 | M | M2.Hpyfe81ORF750P (99% identity) | CCTC | M1.Hpyfe55ORF6810P |
| 6815 | M | M1.HpyCHN7IV (100% identity) | CCTC | M2.Hpyfe55ORF6810P |
| 6820 | agmatine deiminase | |||
| 6865 | DNA methyltransferase | |||
| 6870 | R | Hpy928ORFGP (97% identity) | GANTC | Hpyfe55ORF6875P |
| 6875 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.Hpyfe55ORF6875P |
| 6880 | N-6 DNA methylase | |||
| 6875 | site-specific DNA-methyltransferase | |||
| 6880 | RM | HpyBT112ORF7075P (92% identity) | Hpyfe55ORF6880P | |
| 6885 | carboxylating nicotinate-nucleotide | |||
| 6935 | copper response regulator transcription factor | |||
| 6940 | R | HpyF75ORF37P (97% identity) | GAAGA | Hpyfe55ORF6945P |
| 6945 | M | M2.HpyK118VIII (99% identity) | GAAGA | M1.Hpyfe55ORF6945P |
| 6950 | M | M2.Hpyfe61ORF7120P (99% identity) | GAAGA | M2.Hpyfe55ORF6945P |
| 6955 | site-specific DNA-methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyGU71CORFEP (96% identity) | M.Hpyfe55ORF40P | |
| 45 | R | Hpyfe61ORF40P (97% identity) | Hpyfe55ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe88ORF655P (95% identity) | Hpyfe55ORF645P | |
| 645 | M | M.HpyPE105ORF6550P (95% identity) | M.Hpyfe55ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| 6950 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyID2ORF195P (97% identity) | M.Hpyfe55ORF6955P | |
| 6960 | R | HpyUM111ORF1645P (95% identity) | Hpyfe55ORF6955P | |
| 6965 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | type I glutamate--ammonia ligase | |||
| 2970 | R | HpyP87GmrSDP (87% identity) | Hpyfe55GmrSD2P | |
| 2975 | 50S ribosomal protein L9 | |||
| 3555 | sel1 repeat family protein | |||
| 3560 | R | HpyJA101GmrSD2P (97% identity) | Hpyfe55GmrSDP | |
| 3565 | NAD(P)H-dependent oxidoreductase | |||