Helicobacter pylori Hpfe056 |
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Putative Helicobacter pylori Hpfe056 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,645,557 bp
GenBank #: CP094126
REBASE acronym: Hpyfe56
Org_num: 57303
All begin MPG06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3055 | type I restriction endonuclease | |||
| 3060 | M | M.HpySG12ORF2550P (96% identity) | CAYNNNNNNNTTG | M.Hpyfe56ORF3060P |
| 3065 | S | S.HpyT029ORF2685P (77% identity) | CAYNNNNNNNTTG | S.Hpyfe56ORF3060P |
| 3070 | R | Hpyfe77ORF4845P (97% identity) | CAYNNNNNNNTTG | Hpyfe56ORF3060P |
| 3075 | hydroxyethylthiazole kinase | |||
| 5215 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyDU15ORF4115P (94% identity) | CTANNNNNNTC | Hpyfe56ORF5235P |
| 5235 | M | M.Hpyfe99ORF5195P (97% identity) | CTANNNNNNTC | M.Hpyfe56ORF5235P |
| 5240 | S | S.Hpyfe123ORF5125P (97% identity) | CTANNNNNNTC | S.Hpyfe56ORF5235P |
| 5250 | RNA degradosome polyphosphate kinase | |||
| 7835 | M48 family metallopeptidase | |||
| 7840 | R | HpyUM085ORF3775P (97% identity) | Hpyfe56ORF7845P | |
| 7845 | M | M.Hpyfe48ORF7700P (87% identity) | M.Hpyfe56ORF7845P | |
| 7850 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | Hpyfe97ORF55P (93% identity) | Hpyfe56ORF50P | |
| 55 | transposase | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe56ORF140P |
| 140 | M | M2.HpyPE138III (93% identity) | CCATC | M1.Hpyfe56ORF140P |
| 145 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M2.Hpyfe56ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyC208ORF7065P (98% identity) | CYANNNNNNTTC | Hpyfe56ORF280P |
| 285 | S | S.HpyV002ORF7115P (71% identity) | S.Hpyfe56ORF280AP | |
| 290 | IS607 family transposase | |||
| 295 | transposase | |||
| 300 | S | S2.HpyBG7ORF7285P (55% identity) | S.Hpyfe56ORF280BP | |
| 305 | DNA polymerase I | |||
| 350 | addiction module antidote protein | |||
| 355 | M | M1.Hpyfe95ORF370P (99% identity) | M1.Hpyfe56ORF355P | |
| 360 | M | M2.HpySW08ORF7490P (98% identity) | M2.Hpyfe56ORF355P | |
| 365 | R | HpyMA23ORF6875P (99% identity) | Hpyfe56ORF355P | |
| 370 | cytochrome-c peroxidase | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | Hpyfe40ORF1425P (94% identity) | CATG | Hpyfe56ORF1435P |
| 1435 | M | M.HpyK012I (98% identity) | CATG | M.Hpyfe56ORF1435P |
| 1440 | HAD family hydrolase | |||
| 1910 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1915 | M | M.HpyK023XIV (98% identity) | GCGC | M.Hpyfe56ORF1915P |
| 1920 | 144 aa hypothetical protein | |||
| 2090 | Laminin subunit alpha-2 precursor | |||
| 2095 | R | Hpyfe73ORF2065P (98% identity) | TCNNGA | Hpyfe56ORF2100P |
| 2100 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe56ORF2100P |
| 2105 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2775 | ATP-dependent helicase | |||
| 2780 | M | M.HpyTW17IX (97% identity) | GTNNAC | M.Hpyfe56ORF2780P |
| 2785 | R | HpyK047ORF4375P (95% identity) | GTNNAC | Hpyfe56ORF2780P |
| 2790 | flagellar hook protein FlgE | |||
| 3725 | 3-5 exonuclease | |||
| 3730 | M | M.HpyPF16V (100% identity) | CCNNGG | M.Hpyfe56ORF3730P |
| 3735 | R | HpyMA18IVP (98% identity) | CCNNGG | Hpyfe56ORF3730P |
| 3740 | 3-5 exonuclease | |||
| 5020 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5025 | R | Hpy38ORF899P (98% identity) | GTAC | Hpyfe56ORF5030P |
| 5030 | M | M.HpyCA1VI (99% identity) | GTAC | M.Hpyfe56ORF5030P |
| 5035 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5120 | catalase | |||
| 5125 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | Hpyfe56ORF5130P |
| 5130 | M | M.Hpyfe76ORF4780P (100% identity) | ACNGT | M.Hpyfe56ORF5130P |
| 5135 | translational GTPase TypA | |||
| 5140 | lipopolysaccharide heptosyltransferase family | |||
| 5145 | M | M.HpyUM065ORF7960P (98% identity) | ATTAAT | M.Hpyfe56ORF5145P |
| 5150 | Hop family outer membrane protein HopJ/HopK | |||
| 6100 | AAA family ATPase | |||
| 6105 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe56ORF6105P |
| 6110 | R | Hpyfe79ORF5750P (93% identity) | CCGG | Hpyfe56ORF6105P |
| 6115 | exodeoxyribonuclease VII large subunit | |||
| 6915 | alpha-1,2-fucosyltransferase | |||
| 6920 | M | M.Hpyfe118ORF6705P (89% identity) | M.Hpyfe56ORF6920P | |
| 6925 | transposase | |||
| 7125 | DNA cytosine methyltransferase | |||
| 7130 | R | HpyJ010IXP (96% identity) | CCTC | Hpyfe56ORF7135P |
| 7135 | M | M1.Hpyfe114ORF6815P (98% identity) | CCTC | M1.Hpyfe56ORF7135P |
| 7140 | M | M1.Hpy199ORFJP (98% identity) | CCTC | M2.Hpyfe56ORF7135P |
| 7145 | agmatine deiminase | |||
| 7185 | S41 family peptidase | |||
| ??? | RM | HpyHP77ORF260P (94% identity) | Hpyfe56ORF7190P | |
| 7205 | carboxylating nicotinate-nucleotide | |||
| 7255 | copper response regulator transcription factor | |||
| 7260 | R | Hpyfe80ORF6885P (99% identity) | GAAGA | Hpyfe56ORF7265P |
| 7265 | M | M1.Hpyfe15ORF6865P (99% identity) | GAAGA | M1.Hpyfe56ORF7265P |
| 7270 | M | M2.Hpyfe101ORF6985P (99% identity) | GAAGA | M2.Hpyfe56ORF7265P |
| 7275 | site-specific DNA-methyltransferase | |||
| 7725 | DUF5343 domain-containing protein | |||
| 7730 | M | M.HpyOK304ORFKP (99% identity) | M.Hpyfe56ORF7730P | |
| 7735 | type II restriction endonuclease | |||
| 7730 | DNA cytosine methyltransferase | |||
| 7735 | R | HpySG09XIIP (94% identity) | Hpyfe56ORF7740P | |
| 7740 | M | M.Hpyfe88ORF7380P (85% identity) | M.Hpyfe56ORF7740P | |
| 7745 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyUM038ORF805P (98% identity) | M.Hpyfe56ORF40P | |
| 45 | R | Hpyfe81ORF40P (97% identity) | Hpyfe56ORF40P | |
| 50 | Eco57I restriction-modification methylase | |||
| 660 | biotin synthase | |||
| 665 | R | Hpyfe122ORF630P (94% identity) | Hpyfe56ORF670P | |
| 670 | M | M.HpyOK68ORFCP (96% identity) | M.Hpyfe56ORF670P | |
| 675 | DNA/RNA non-specific endonuclease | |||
| 7270 | site-specific DNA-methyltransferase | |||
| 7275 | M | M.HpyCHN2XVI (97% identity) | M.Hpyfe56ORF7275P | |
| 7280 | R | Hpybs1ORFLP (95% identity) | Hpyfe56ORF7275P | |
| 7285 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3445 | sel1 repeat family protein | |||
| 3450 | R | HpyK046GmrSD2P (94% identity) | Hpyfe56GmrSD2P | |
| 3455 | NAD(P)H-dependent oxidoreductase | |||
| 4980 | 50S ribosomal protein L9 | |||
| 4985 | R | HpyK041GmrSDP (91% identity) | Hpyfe56GmrSDP | |
| 4990 | type I glutamate--ammonia ligase | |||