Helicobacter pylori Hpfe057 |
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Putative Helicobacter pylori Hpfe057 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,577,941 bp
GenBank #: CP094124
REBASE acronym: Hpyfe57
Org_num: 57304
All begin MPG01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4990 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyU425ORF2260P (80% identity) | Hpyfe57ORF4995P | |
| 5005 | S | S.Hpyfe48ORF4915P (64% identity) | S.Hpyfe57ORF4995P | |
| 5015 | RNA degradosome polyphosphate kinase | |||
| 7565 | M48 family metallopeptidase | |||
| 7570 | R | Hpyfe74ORF7605P (97% identity) | CRTANNNNNNNTC | Hpyfe57ORF7575P |
| 7575 | M | M.HpyOK212ORFFP (96% identity) | CRTANNNNNNNTC | M.Hpyfe57ORF7575P |
| 7580 | CAAX protease | |||
| 7585 | S | S.Hpyfe70ORF7585P (97% identity) | CRTANNNNNNNTC | S.Hpyfe57ORF7575P |
| 7590 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 715 aa hypothetical protein | |||
| 60 | RM | Hpy17ORF1417P (88% identity) | Hpyfe57ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyT026IVP (99% identity) | CCATC | Hpyfe57ORF140P |
| 140 | M | M1.Hpyfe93ORF140P (99% identity) | CCATC | M1.Hpyfe57ORF140P |
| 145 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpyfe57ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpy1100ORFQP (99% identity) | CYANNNNNNTTC | Hpyfe57ORF280P |
| 285 | S | S.HpySG26ORF7105P (97% identity) | CYANNNNNNTTC | S.Hpyfe57ORF280P |
| 290 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | HpyPF57IP (97% identity) | CATG | Hpyfe57ORF1415P |
| 1415 | M | M.HpyK034I (98% identity) | CATG | M.Hpyfe57ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.HpyV007XIII (98% identity) | M.Hpyfe57ORF1870P | |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe57ORF2055P |
| 2055 | M | M.HpyK105ORF5210P (97% identity) | TCNNGA | M.Hpyfe57ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2835 | ATP-dependent helicase | |||
| 2840 | M | M.HpyPU001VIII (97% identity) | GTNNAC | M.Hpyfe57ORF2840P |
| 2845 | R | HpyTW09IXP (98% identity) | GTNNAC | Hpyfe57ORF2840P |
| 2850 | flagellar hook protein FlgE | |||
| 3035 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3040 | M | M.HpyK053IX (98% identity) | GTAC | M.Hpyfe57ORF3040P |
| 3045 | R | HpyV002IXP (98% identity) | GTAC | Hpyfe57ORF3040P |
| 3050 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4885 | catalase | |||
| 4890 | R | HpyP005ORF2410P (82% identity) | ACGT | Hpyfe57ORF4895P |
| 4895 | M | M.Hpy3ORF5720P (99% identity) | ACGT | M.Hpyfe57ORF4895P |
| 4900 | GIY-YIG nuclease family protein | |||
| 4895 | DNA cytosine methyltransferase | |||
| 4900 | R | Hpyfe97ORF5110P (99% identity) | ACNGT | Hpyfe57ORF4905P |
| 4905 | M | M.Hpyfe76ORF4780P (96% identity) | ACNGT | M.Hpyfe57ORF4905P |
| 4910 | translational GTPase TypA | |||
| 4915 | lipopolysaccharide heptosyltransferase family | |||
| 4920 | M | M.Hpy5ORF5760P (98% identity) | ATTAAT | M.Hpyfe57ORF4920P |
| 4925 | Hop family outer membrane protein HopJ/HopK | |||
| 5865 | AAA family ATPase | |||
| 5870 | M | M.Hpyfe124ORF5650P (91% identity) | M.Hpyfe57ORF5870P | |
| 5875 | R | HpyTW03VP (95% identity) | Hpyfe57ORF5870P | |
| 5880 | exodeoxyribonuclease VII large subunit | |||
| 6290 | pseudaminic acid synthase | |||
| ??? | R | R2.HpyNP04ORF1110P (87% identity) | R1.Hpyfe57ORF6310P | |
| 6305 | R | R2.Hpyfe122ORF6200P (96% identity) | R2.Hpyfe57ORF6310P | |
| ??? | M | M2.HpyK116ORF1185P (98% identity) | M1.Hpyfe57ORF6310P | |
| 6315 | DNA cytosine methyltransferase | |||
| 6320 | M | M1.HpyGE16ORF875P (43% identity) | M2.Hpyfe57ORF6310P | |
| 6325 | IS1595 family transposase | |||
| 6725 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6730 | M | M.Hpyfe23ORF6770P (98% identity) | GATC | M.Hpyfe57ORF6730P |
| 6735 | R | HpyHP22ORF1835P (97% identity) | GATC | Hpyfe57ORF6730P |
| 6745 | ACP S-malonyltransferase | |||
| 6895 | sodium/proline symporter PutP | |||
| 6900 | M | M1.Hpyfe75ORF7120P (98% identity) | M1.Hpyfe57ORF6900P | |
| 6905 | M | M1.HpyK118V (98% identity) | CCTC | M2.Hpyfe57ORF6900P |
| 6910 | agmatine deiminase | |||
| 6955 | DNA methyltransferase | |||
| 6960 | R | HpyK050VIP (97% identity) | GANTC | Hpyfe57ORF6965P |
| 6965 | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.Hpyfe57ORF6965P |
| 6970 | DNA methyltransferase | |||
| 6965 | site-specific DNA-methyltransferase | |||
| 6975 | RM | HpyTW20ORF280P (91% identity) | Hpyfe57ORF6975P | |
| 6980 | carboxylating nicotinate-nucleotide | |||
| 7475 | translation elongation factor Ts | |||
| 7480 | R | HpyF210ORF1505P (99% identity) | TGCA | Hpyfe57ORF7485P |
| 7485 | M | M.Hpyfe110ORF7955P (98% identity) | TGCA | M.Hpyfe57ORF7485P |
| 7490 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe40ORF40P (97% identity) | M.Hpyfe57ORF40P | |
| 50 | R | HpyK013ORF7350P (97% identity) | Hpyfe57ORF40P | |
| 55 | 715 aa hypothetical protein | |||
| 610 | biotin synthase | |||
| 615 | R | HpyH1ORFDP (91% identity) | Hpyfe57ORF620P | |
| 620 | M | M.HpyK004ORF6525P (97% identity) | M.Hpyfe57ORF620P | |
| 625 | ABC transporter ATP-binding protein/permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3080 | type I glutamate--ammonia ligase | |||
| 3085 | R | HpyF235GmrSD2P (74% identity) | Hpyfe57GmrSD2P | |
| 3090 | 50S ribosomal protein L9 | |||
| 3660 | sel1 repeat family protein | |||
| 3665 | R | Hpyfe22GmrSDP (95% identity) | Hpyfe57GmrSDP | |
| 3670 | NAD(P)H-dependent oxidoreductase | |||