Helicobacter pylori Hpfe058 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe058 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,615,882 bp
GenBank #: CP094122
REBASE acronym: Hpyfe58
Org_num: 57305
All begin MPG73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4565 | outer membrane beta-barrel protein HofF | |||
| 4570 | S | S.HpyF227ORFNP (95% identity) | ACANNNNNNNCTT | S.Hpyfe58ORF4570P |
| 4575 | cadmium-translocating P-type ATPase | |||
| 4865 | hydroxyethylthiazole kinase | |||
| 4870 | R | Hpyfe92ORF3170P (97% identity) | ACANNNNNNNRTG | Hpyfe58ORF4885P |
| 4875 | S | S.HpyK025XIII (95% identity) | ACANNNNNNNRTG | S.Hpyfe58ORF4885P |
| ??? | M | M.HpyKH35ORFUP (82% identity) | ACANNNNNNNRTG | M.Hpyfe58ORF4885P |
| 4895 | COG2958 family protein | |||
| 7780 | M48 family metallopeptidase | |||
| 7785 | R | Hpyfe32ORF7655P (97% identity) | TCTANNNNNNCTT | Hpyfe58ORF7790P |
| 7790 | M | M.HpyOK03ORFGP (97% identity) | TCTANNNNNNCTT | M.Hpyfe58ORF7790P |
| 7795 | S | S.HpyIR9ORF6780P (96% identity) | TCTANNNNNNCTT | S.Hpyfe58ORF7790P |
| 7800 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 709 aa hypothetical protein | |||
| 60 | RM | Hpy21ORF1430P (88% identity) | Hpyfe58ORF60P | |
| 65 | 176 aa hypothetical protein | |||
| 295 | ComF family protein | |||
| 300 | RM | HpyK51ORF1361P (98% identity) | CYANNNNNNTTC | Hpyfe58ORF300P |
| 305 | S | S.Hpyfe8ORF7160P (46% identity) | S.Hpyfe58ORF300AP | |
| 310 | S | S.HpyJ021ORF6855P (43% identity) | S.Hpyfe58ORF300BP | |
| 315 | DNA polymerase I | |||
| 1435 | serine O-acetyltransferase | |||
| 1440 | R | HpyK020IP (96% identity) | CATG | Hpyfe58ORF1445P |
| 1445 | M | M.HpyHK840ORFUP (98% identity) | CATG | M.Hpyfe58ORF1445P |
| 1450 | HAD family hydrolase | |||
| 1615 | purine-nucleoside phosphorylase | |||
| 1620 | R | HpyMA06IIP (100% identity) | TCNGA | Hpyfe58ORF1625P |
| 1625 | M | M.HpyBT112ORF1620P (99% identity) | TCNGA | M.Hpyfe58ORF1625P |
| 1630 | 76 aa hypothetical protein | |||
| 2015 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2020 | M | M.HpyAR8XIV (98% identity) | GCGC | M.Hpyfe58ORF2020P |
| 2025 | 144 aa hypothetical protein | |||
| 2195 | Laminin subunit alpha-2 precursor | |||
| ??? | R | Hpyfe85ORF2060P (98% identity) | TCNNGA | Hpyfe58ORF2205P |
| 2205 | M | M.HpyH137ORF2120P (99% identity) | TCNNGA | M.Hpyfe58ORF2205P |
| 2210 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2985 | ATP-dependent helicase | |||
| 2990 | M | M.HpyHP89XI (98% identity) | GTNNAC | M.Hpyfe58ORF2990P |
| 2995 | R | HpyF219ORFIP (97% identity) | GTNNAC | Hpyfe58ORF2990P |
| 3000 | flagellar hook protein FlgE | |||
| 4035 | outer membrane protein | |||
| 4040 | RM | Hpyfe36ORF3825P (93% identity) | Hpyfe58ORF4040P | |
| 4045 | (Fe-S)-binding protein | |||
| 5040 | catalase | |||
| 5045 | R | HpyK013ORF2470P (99% identity) | ACNGT | Hpyfe58ORF5050P |
| 5050 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe58ORF5050P |
| 5055 | translational GTPase TypA | |||
| 5060 | lipopolysaccharide heptosyltransferase family | |||
| 5065 | M | M.Hpyfe70ORF4910P (98% identity) | ATTAAT | M.Hpyfe58ORF5065P |
| 5070 | Hop family outer membrane protein HopJ/HopK | |||
| 6020 | AAA family ATPase | |||
| 6025 | M | M.HpyK012V (99% identity) | CCGG | M.Hpyfe58ORF6025P |
| 6030 | R | HpySP804IVP (97% identity) | CCGG | Hpyfe58ORF6025P |
| 6035 | exodeoxyribonuclease VII large subunit | |||
| 6840 | alpha-1,2-fucosyltransferase | |||
| 6845 | M | M.HpyAs006VII (98% identity) | GATC | M.Hpyfe58ORF6845P |
| 6850 | R | HpyT030IXP (97% identity) | GATC | Hpyfe58ORF6845P |
| 6860 | ACP S-malonyltransferase | |||
| 7015 | DNA cytosine methyltransferase | |||
| 7020 | R | HpyK109XIIP (100% identity) | GTSAC | Hpyfe58ORF7025P |
| 7025 | M | M.HpyK105XI (99% identity) | GTSAC | M.Hpyfe58ORF7025P |
| 7030 | HNH endonuclease | |||
| 7025 | site-specific DNA-methyltransferase | |||
| 7030 | R | Hpyfe23ORF6975P (97% identity) | CCTC | Hpyfe58ORF7035P |
| 7035 | M | M2.HpySG05IVP (98% identity) | CCTC | M1.Hpyfe58ORF7035P |
| 7040 | M | M2.Hpyfe39ORF7035P (99% identity) | CCTC | M2.Hpyfe58ORF7035P |
| 7045 | agmatine deiminase | |||
| 7090 | DNA methyltransferase | |||
| 7095 | R | HpyCA8VIIIP (95% identity) | GANTC | Hpyfe58ORF7100P |
| 7100 | M | M.HpyUM065ORF2155P (99% identity) | GANTC | M.Hpyfe58ORF7100P |
| 7105 | DNA methyltransferase | |||
| 7100 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpySW21ORF5980P (88% identity) | Hpyfe58ORF7105P | |
| 7125 | carboxylating nicotinate-nucleotide | |||
| 7175 | copper response regulator transcription factor | |||
| 7180 | R | HpyHP32VIIIP (98% identity) | GAAGA | Hpyfe58ORF7185P |
| 7185 | M | M2.HpyID7VIII (99% identity) | GAAGA | M1.Hpyfe58ORF7185P |
| 7190 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.Hpyfe58ORF7185P |
| 7195 | site-specific DNA-methyltransferase | |||
| 7665 | translation elongation factor Ts | |||
| 7670 | R | HpyP87ORFLP (97% identity) | TGCA | Hpyfe58ORF7675P |
| 7675 | M | M.Hpyfe93ORF7595P (99% identity) | TGCA | M.Hpyfe58ORF7675P |
| 7680 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyKG10ORF7535P (97% identity) | M.Hpyfe58ORF40P | |
| 50 | R | HpyTW02ORF6990P (97% identity) | Hpyfe58ORF40P | |
| 55 | 709 aa hypothetical protein | |||
| 665 | biotin synthase | |||
| 670 | R | HpySG03ORF6775P (95% identity) | Hpyfe58ORF675P | |
| 675 | M | M.HpyJSHR6ORF1260P (97% identity) | M.Hpyfe58ORF675P | |
| 680 | DNA/RNA non-specific endonuclease | |||
| 7190 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyJA109ORF200P (96% identity) | M.Hpyfe58ORF7195P | |
| 7200 | R | Hpyfe123ORF7160P (96% identity) | Hpyfe58ORF7195P | |
| 7205 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3230 | type I glutamate--ammonia ligase | |||
| 3235 | R | Hpyfe61GmrSD2P (91% identity) | Hpyfe58GmrSDP | |
| 3240 | 50S ribosomal protein L9 | |||
| 3815 | sel1 repeat family protein | |||
| 3820 | R | HpyYN483GmrSD2P (93% identity) | Hpyfe58GmrSD2P | |
| 3825 | NAD(P)H-dependent oxidoreductase | |||