Helicobacter pylori Hpfe059 |
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Putative Helicobacter pylori Hpfe059 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,588,133 bp
GenBank #: CP094121
REBASE acronym: Hpyfe59
Org_num: 57306
All begin MPG25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4365 | outer membrane beta-barrel protein HofF | |||
| 4370 | S | S.Hpyfe52ORF4595P (96% identity) | CTANNNNNNNGTT | S.Hpyfe59ORF4370P |
| 4375 | cadmium-translocating P-type ATPase | |||
| 4650 | hydroxyethylthiazole kinase | |||
| 4655 | R | Hpyfe122ORF4610P (97% identity) | AACNNNNNNTTC | Hpyfe59ORF4665P |
| 4660 | S | S.Hpy334ORFTP (95% identity) | AACNNNNNNTTC | S.Hpyfe59ORF4665P |
| 4665 | M | M.HpyU425ORF4215P (97% identity) | AACNNNNNNTTC | M.Hpyfe59ORF4665P |
| 4670 | DNA cytosine methyltransferase | |||
| 4935 | type I restriction endonuclease | |||
| 4940 | R | Hpyfe6ORF4830P (95% identity) | CTANNNNNNTC | Hpyfe59ORF4945P |
| 4945 | M | M.Hpyfe5ORF5065P (97% identity) | CTANNNNNNTC | M.Hpyfe59ORF4945P |
| 4950 | S | S.HpyT029ORF4580P (98% identity) | CTANNNNNNTC | S.Hpyfe59ORF4945P |
| 4960 | RNA degradosome polyphosphate kinase | |||
| 7550 | M48 family metallopeptidase | |||
| 7555 | R | HpyNCI18ORFFP (91% identity) | CRTANNNNNNNTC | Hpyfe59ORF7560P |
| 7560 | M | M.HpyCHN5ORF7520P (96% identity) | CRTANNNNNNNTC | M.Hpyfe59ORF7560P |
| 7565 | S | S.Hpyfe83ORF7535P (97% identity) | CRTANNNNNNNTC | S.Hpyfe59ORF7560P |
| 7570 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyF233ORFAP (94% identity) | Hpyfe59ORF55P | |
| 60 | transcription termination factor NusA | |||
| 130 | AlwI family type II restriction endonuclease | |||
| 135 | M | M.HpyKH17ORFB1P (99% identity) | M.Hpyfe59ORF135P | |
| 140 | type II methylase | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | Hpyfe106ORF1405P (98% identity) | CATG | Hpyfe59ORF1420P |
| 1420 | M | M.Hpyfe12ORF1405P (99% identity) | CATG | M.Hpyfe59ORF1420P |
| 1425 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyMA10XIII (98% identity) | GCGC | M.Hpyfe59ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe33ORF2040P (100% identity) | TCNNGA | Hpyfe59ORF2060P |
| 2060 | M | M.HpySG05XII (99% identity) | TCNNGA | M.Hpyfe59ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2705 | ATP-dependent helicase | |||
| 2710 | M | M.HpyPU001VIII (99% identity) | GTNNAC | M.Hpyfe59ORF2710P |
| 2715 | R | Hpyfe113ORF285P (98% identity) | GTNNAC | Hpyfe59ORF2710P |
| 2720 | flagellar hook protein FlgE | |||
| 2900 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2905 | M | M.Hpyfe112ORF4810P (98% identity) | GTAC | M.Hpyfe59ORF2905P |
| 2910 | R | HpyK006VIIP (98% identity) | GTAC | Hpyfe59ORF2905P |
| 2915 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3845 | outer membrane protein | |||
| 3850 | RM | HpyM26CORFMP (79% identity) | Hpyfe59ORF3850P | |
| 3855 | (Fe-S)-binding protein | |||
| 4665 | type I restriction-modification system subunit | |||
| 4670 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.Hpyfe59ORF4670P |
| 4675 | R | HpySG12ORF2545P (98% identity) | GGCC | Hpyfe59ORF4670P |
| 4680 | phosphatase PAP2 family protein | |||
| 4825 | catalase | |||
| 4830 | R | HpyUM085ORF7545P (98% identity) | ACGT | Hpyfe59ORF4835P |
| 4835 | M | M.HpyTW08ORF2375P (99% identity) | ACGT | M.Hpyfe59ORF4835P |
| 4840 | GIY-YIG nuclease family protein | |||
| 4835 | DNA cytosine methyltransferase | |||
| 4840 | R | Hpyfe71ORF4900P (99% identity) | ACNGT | Hpyfe59ORF4845P |
| 4845 | M | M.HpyQ59ORFXP (99% identity) | ACNGT | M.Hpyfe59ORF4845P |
| 4850 | translational GTPase TypA | |||
| 4855 | lipopolysaccharide heptosyltransferase family | |||
| 4860 | M | M.HpyMKF10ORF520P (98% identity) | ATTAAT | M.Hpyfe59ORF4860P |
| 4865 | Hop family outer membrane protein HopJ/HopK | |||
| 5370 | group I intron-associated PD-(D/E)XK | |||
| 5375 | M | M.Hpyfe93ORF5425P (99% identity) | GCNGC | M.Hpyfe59ORF5375P |
| 5380 | translation elongation factor 4 | |||
| 5570 | 125 aa hypothetical protein | |||
| 5575 | M | M.Hpyfe33ORF5515P (100% identity) | CTNAG | M.Hpyfe59ORF5575P |
| 5580 | R | HpyK051IVP (98% identity) | CTNAG | Hpyfe59ORF5575P |
| 5585 | polysaccharide deacetylase | |||
| 5815 | AAA family ATPase | |||
| 5820 | M | M.Hpyfe122ORF5760P (100% identity) | CCGG | M.Hpyfe59ORF5820P |
| 5825 | R | HpyK052IVP (96% identity) | CCGG | Hpyfe59ORF5820P |
| 5830 | exodeoxyribonuclease VII large subunit | |||
| 6495 | ACP S-malonyltransferase | |||
| 6505 | R | Hpy274ORF182P (96% identity) | GATC | Hpyfe59ORF6510P |
| 6510 | M | M.HpyJ028VI (98% identity) | GATC | M.Hpyfe59ORF6510P |
| 6515 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6860 | sodium/proline symporter PutP | |||
| 6865 | M | M1.Hpyfe75ORF7120P (99% identity) | M1.Hpyfe59ORF6865P | |
| 6870 | M | M1.HpySG33V (99% identity) | CCTC | M2.Hpyfe59ORF6865P |
| 6875 | agmatine deiminase | |||
| 6915 | S41 family peptidase | |||
| 6925 | RM | Hpyfe15ORF6800P (93% identity) | Hpyfe59ORF6925P | |
| 6930 | carboxylating nicotinate-nucleotide | |||
| 7450 | 107 aa hypothetical protein | |||
| 7455 | R | Hpyfe99ORF7775P (99% identity) | TGCA | Hpyfe59ORF7460P |
| 7460 | M | M.HpyTW01III (99% identity) | TGCA | M.Hpyfe59ORF7460P |
| 7465 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe80ORF40P (98% identity) | M.Hpyfe59ORF40P | |
| 50 | R | HpyJ010ORF7110P (96% identity) | Hpyfe59ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | HpySG17ORF1010P (95% identity) | Hpyfe59ORF625P | |
| 625 | M | M.HpyMA06ORF6815P (34% identity) | M.Hpyfe59ORF625P | |
| 630 | IS607 family transposase | |||
| 6980 | copper response regulator transcription factor | |||
| ??? | M | M.HpySG38ORF205P (97% identity) | M.Hpyfe59ORF6985P | |
| 6990 | R | Hpyfe68ORF6895P (95% identity) | Hpyfe59ORF6985P | |
| 6995 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3525 | sel1 repeat family protein | |||
| 3530 | R | Hpyfe39GmrSDP (95% identity) | Hpyfe59GmrSDP | |
| 3535 | NAD(P)H-dependent oxidoreductase | |||