Helicobacter pylori Hpfe060 |
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Putative Helicobacter pylori Hpfe060 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,576,166 bp
GenBank #: CP094178
REBASE acronym: Hpyfe60
Org_num: 57307
All begin MPF93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3030 | phosphatase PAP2 family protein | |||
| 3035 | M | M.Hpyfe97ORF4930P (93% identity) | M.Hpyfe60ORF3035P | |
| 3040 | S | S.Hpy52ORF497P (66% identity) | S.Hpyfe60ORF3035P | |
| 3045 | R | Hpyfe110ORF4070P (97% identity) | Hpyfe60ORF3035P | |
| 3050 | hydroxyethylthiazole kinase | |||
| 3325 | cadmium-translocating P-type ATPase | |||
| 3330 | S | S.HpyCHN7XVI (98% identity) | CTANNNNNNNTTC | S.Hpyfe60ORF3330P |
| 3335 | outer membrane beta-barrel protein HofF | |||
| 7635 | M48 family metallopeptidase | |||
| 7640 | R | HpyMKF3ORF1462P (96% identity) | Hpyfe60ORF7645P | |
| 7645 | M | M.HpyGU62AORFFP (97% identity) | M.Hpyfe60ORF7645P | |
| 7650 | CAAX protease | |||
| 7655 | S | S.HpyCHN1ORF7355P (97% identity) | S.Hpyfe60ORF7645P | |
| 7660 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyBS07ORF4995P (90% identity) | Hpyfe60ORF55P | |
| 60 | 85 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe60ORF155P |
| 155 | M | M2.HpyAL04ORFLP (99% identity) | CCATC | M1.Hpyfe60ORF155P |
| 160 | M | M1.HpyM26CORFBP (99% identity) | CCATC | M2.Hpyfe60ORF155P |
| 165 | LptF/LptG family permease | |||
| 290 | ComF family protein | |||
| 295 | RM | Hpy3ORF14610P (98% identity) | CYANNNNNNTTC | Hpyfe60ORF295P |
| 300 | S | S.HpyJ012ORF6925P (68% identity) | S.Hpyfe60ORF295P | |
| 305 | DNA polymerase I | |||
| 1285 | 158 aa hypothetical protein | |||
| 1290 | M | M.HpyMA21ORF6235P (97% identity) | M.Hpyfe60ORF1290P | |
| 1295 | DHHA1 domain-containing protein | |||
| 1450 | IceA2 protein | |||
| 1455 | M | M.HpyJSHR31ORF2760P (98% identity) | CATG | M.Hpyfe60ORF1455P |
| 1460 | HAD family hydrolase | |||
| 1910 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1915 | M | M.HpyMM05XI (97% identity) | GCGC | M.Hpyfe60ORF1915P |
| 1920 | 144 aa hypothetical protein | |||
| 2090 | Laminin subunit alpha-2 precursor | |||
| 2095 | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | Hpyfe60ORF2100P |
| 2100 | M | M.Hpyfe62ORF2050P (99% identity) | TCNNGA | M.Hpyfe60ORF2100P |
| 2105 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2765 | ATP-dependent helicase | |||
| 2770 | M | M.HpyCHN3VIII (99% identity) | GTNNAC | M.Hpyfe60ORF2770P |
| 2775 | R | HpyKH4ORFLP (99% identity) | GTNNAC | Hpyfe60ORF2770P |
| 2780 | flagellar hook protein FlgE | |||
| 3855 | (Fe-S)-binding protein | |||
| 3860 | RM | Hpyfe36ORF3825P (92% identity) | Hpyfe60ORF3860P | |
| 3865 | 65 aa hypothetical protein | |||
| 4725 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4730 | R | HpyK109VIIIP (98% identity) | GTAC | Hpyfe60ORF4735P |
| 4735 | M | M.HpyPF16IX (99% identity) | GTAC | M.Hpyfe60ORF4735P |
| 4740 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4830 | catalase | |||
| 4835 | R | Hpyfe64ORF3345P (97% identity) | ACGT | Hpyfe60ORF4840P |
| 4840 | M | M.Hpyfe96ORF4835P (98% identity) | ACGT | M.Hpyfe60ORF4840P |
| 4845 | GIY-YIG nuclease family protein | |||
| 4840 | DNA cytosine methyltransferase | |||
| 4845 | R | Hpyfe88ORF4775P (98% identity) | ACNGT | Hpyfe60ORF4850P |
| 4850 | M | M.Hpy63ORF486P (91% identity) | M.Hpyfe60ORF4850P | |
| 4855 | translational GTPase TypA | |||
| 4860 | lipopolysaccharide heptosyltransferase family | |||
| 4865 | M | M.HpyJ029IX (98% identity) | ATTAAT | M.Hpyfe60ORF4865P |
| 4870 | Hop family outer membrane protein HopJ/HopK | |||
| 5585 | 125 aa hypothetical protein | |||
| 5590 | M | M.Hpyfe17ORF5490P (99% identity) | CTNAG | M.Hpyfe60ORF5590P |
| 5595 | R | Hpy83ORF369P (98% identity) | CTNAG | Hpyfe60ORF5590P |
| 5600 | polysaccharide deacetylase | |||
| 5835 | AAA family ATPase | |||
| 5840 | M | M.HpyH137ORF6210P (100% identity) | CCGG | M.Hpyfe60ORF5840P |
| 5845 | R | HpyPE18XIIIP (94% identity) | CCGG | Hpyfe60ORF5840P |
| 5850 | 204 aa hypothetical protein | |||
| 5850 | 204 aa hypothetical protein | |||
| 5855 | M | M.Hpyfe72ORF5775P (96% identity) | TCGA | M.Hpyfe60ORF5855P |
| 5860 | exodeoxyribonuclease VII large subunit | |||
| 6535 | ACP S-malonyltransferase | |||
| 6545 | R | Hpy66IIIP (96% identity) | GATC | Hpyfe60ORF6550P |
| 6550 | M | M.HpyNP07IX (97% identity) | GATC | M.Hpyfe60ORF6550P |
| 6555 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6940 | sodium/proline symporter PutP | |||
| 6945 | M | M1.Hpyfe52ORF6755P (99% identity) | M1.Hpyfe60ORF6945P | |
| 6950 | M | M1.HpyK118V (99% identity) | CCTC | M2.Hpyfe60ORF6945P |
| 6955 | agmatine deiminase | |||
| 6995 | S41 family peptidase | |||
| ??? | RM | Hpyfe96ORF6940P (94% identity) | Hpyfe60ORF7000P | |
| 7010 | carboxylating nicotinate-nucleotide | |||
| 7525 | 129 aa hypothetical protein | |||
| 7530 | R | HpyF210ORF1505P (98% identity) | TGCA | Hpyfe60ORF7535P |
| 7535 | M | M.Hpyfe110ORF7955P (98% identity) | TGCA | M.Hpyfe60ORF7535P |
| 7540 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyQ59ORFWP (98% identity) | GWCAY | M.Hpyfe60ORF40P |
| 50 | R | Hpyfe52ORF40P (97% identity) | GWCAY | Hpyfe60ORF40P |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 645 | type III restriction endonuclease subunit R | |||
| 650 | R | Hpyfe35ORF620P (95% identity) | Hpyfe60ORF655P | |
| 655 | M | M.Hpyfe100ORF635P (96% identity) | M.Hpyfe60ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| 7060 | copper response regulator transcription factor | |||
| 7065 | M | M.Hpybs3ORFXP (98% identity) | M.Hpyfe60ORF7065P | |
| 7070 | R | HpyK116ORF205P (96% identity) | Hpyfe60ORF7065P | |
| 7075 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4100 | NAD(P)H-dependent oxidoreductase | |||
| 4105 | R | HpyK052GmrSD2P (95% identity) | Hpyfe60GmrSD2P | |
| 4110 | sel1 repeat family protein | |||
| 4685 | 50S ribosomal protein L9 | |||
| 4690 | R | HpyK99GmrSD2P (89% identity) | Hpyfe60GmrSDP | |
| 4695 | type I glutamate--ammonia ligase | |||