Helicobacter pylori Hpfe062 |
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Putative Helicobacter pylori Hpfe062 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,560,534 bp
GenBank #: CP094177
REBASE acronym: Hpyfe62
Org_num: 57309
All begin MPG60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | phosphatase PAP2 family protein | |||
| 2970 | M | M.Hpyfe32ORF4750P (96% identity) | M.Hpyfe62ORF2970P | |
| 2975 | S | S1.Hpy1838CORFA1P (75% identity) | S.Hpyfe62ORF2970P | |
| 2980 | R | HpyK008ORF2545P (96% identity) | Hpyfe62ORF2970P | |
| 2985 | hydroxyethylthiazole kinase | |||
| 3260 | cadmium-translocating P-type ATPase | |||
| 3265 | S | S.HpySWT08XII (91% identity) | GAANNNNNNNTTC | S.Hpyfe62ORF3265P |
| 3270 | outer membrane beta-barrel protein HofF | |||
| 7490 | M48 family metallopeptidase | |||
| 7495 | R | Hpyfe126ORF7605P (96% identity) | Hpyfe62ORF7500P | |
| 7500 | M | M.HpyPE103ORF7520P (97% identity) | M.Hpyfe62ORF7500P | |
| 7505 | S | S.Hpy9810ORF4P (97% identity) | S.Hpyfe62ORF7500P | |
| 7510 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe60ORF55P (92% identity) | Hpyfe62ORF55P | |
| 60 | CLPTM1 family protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpyfe75ORF215P (98% identity) | CCATC | Hpyfe62ORF155P |
| 155 | M | M2.HpysHP34ORF1580P (100% identity) | CCATC | M1.Hpyfe62ORF155P |
| 160 | M | M2.Hpyfe76ORF140P (99% identity) | CCATC | M2.Hpyfe62ORF155P |
| 165 | LptF/LptG family permease | |||
| 290 | ComF family protein | |||
| 295 | RM | HpyQ55ORFTP (98% identity) | CYANNNNNNTTC | Hpyfe62ORF295P |
| 300 | S | S1.Hpyfe120ORF275P (96% identity) | S1.Hpyfe62ORF295P | |
| 305 | S | S.HpyC001ORF7210P (43% identity) | S2.Hpyfe62ORF295P | |
| 310 | DNA polymerase I | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | R | HpyHP82IP (96% identity) | CATG | Hpyfe62ORF1410P |
| 1410 | M | M.HpyUM023ORF4605P (97% identity) | CATG | M.Hpyfe62ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1860 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1865 | M | M.HpySP07XV (97% identity) | GCGC | M.Hpyfe62ORF1865P |
| 1870 | 144 aa hypothetical protein | |||
| 2040 | Laminin subunit alpha-2 precursor | |||
| 2045 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe62ORF2050P |
| 2050 | M | M.Hpyfe60ORF2100P (99% identity) | TCNNGA | M.Hpyfe62ORF2050P |
| 2055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2695 | ATP-dependent helicase | |||
| 2700 | M | M.HpyTW05XI (98% identity) | GTNNAC | M.Hpyfe62ORF2700P |
| 2705 | R | HpyK051VIIP (91% identity) | GTNNAC | Hpyfe62ORF2700P |
| 2710 | flagellar hook protein FlgE | |||
| 3785 | (Fe-S)-binding protein | |||
| 3790 | RM | HpyPF57ORF3445P (93% identity) | Hpyfe62ORF3790P | |
| 3795 | outer membrane protein | |||
| 3860 | 3-5 exonuclease | |||
| 3865 | M | M.HpyU302III (100% identity) | CCNNGG | M.Hpyfe62ORF3865P |
| 3870 | R | Hpyfe122ORF3700P (99% identity) | CCNNGG | Hpyfe62ORF3865P |
| 3875 | 3-5 exonuclease | |||
| 4645 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4650 | R | HpyHP94VIIIP (96% identity) | GTAC | Hpyfe62ORF4655P |
| 4655 | M | M.HpySG09VIII (99% identity) | GTAC | M.Hpyfe62ORF4655P |
| 4660 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4740 | catalase | |||
| 4745 | R | HpyUM065ORF7975P (99% identity) | ACGT | Hpyfe62ORF4750P |
| 4750 | M | M.HpyJA115ORF2285P (99% identity) | ACGT | M.Hpyfe62ORF4750P |
| 4755 | GIY-YIG nuclease family protein | |||
| 4750 | DNA cytosine methyltransferase | |||
| 4755 | R | Hpyfe29ORF4850P (98% identity) | ACNGT | Hpyfe62ORF4760P |
| 4760 | M | M.Hpybs3ORFQP (99% identity) | ACNGT | M.Hpyfe62ORF4760P |
| 4765 | translational GTPase TypA | |||
| 4770 | lipopolysaccharide heptosyltransferase family | |||
| 4775 | M | M.HpyJ029IX (98% identity) | ATTAAT | M.Hpyfe62ORF4775P |
| 4780 | Hop family outer membrane protein HopJ/HopK | |||
| 5495 | 119 aa hypothetical protein | |||
| 5500 | M | M.HpySP316ORF1935P (93% identity) | CTNAG | M.Hpyfe62ORF5500P |
| 5505 | R | HpyK110VIP (96% identity) | CTNAG | Hpyfe62ORF5500P |
| 5510 | polysaccharide deacetylase | |||
| 5745 | AAA family ATPase | |||
| 5750 | M | M.Hpybs1ORFRP (98% identity) | CCGG | M.Hpyfe62ORF5750P |
| 5755 | R | HpyCHN3IIIP (96% identity) | CCGG | Hpyfe62ORF5750P |
| 5760 | exodeoxyribonuclease VII large subunit | |||
| 6560 | alpha-1,2-fucosyltransferase | |||
| 6565 | M | M.HpyMA15XII (98% identity) | GATC | M.Hpyfe62ORF6565P |
| 6570 | R | HpyTW03XIIIP (96% identity) | GATC | Hpyfe62ORF6565P |
| 6580 | ACP S-malonyltransferase | |||
| 6755 | DNA cytosine methyltransferase | |||
| 6760 | R | HpyFD568ORFFP (94% identity) | CCTC | Hpyfe62ORF6765P |
| 6765 | M | M1.HpyJSHR31ORF13790P (98% identity) | CCTC | M1.Hpyfe62ORF6765P |
| 6770 | M | M1.HpyK046IV (98% identity) | CCTC | M2.Hpyfe62ORF6765P |
| 6775 | agmatine deiminase family protein | |||
| 6820 | DNA methyltransferase | |||
| 6825 | R | R1.Hpyfe104ORF6780P (99% identity) | R1.Hpyfe62ORF6835P | |
| 6830 | R | R2.Hpyfe1ORF7070P (100% identity) | R2.Hpyfe62ORF6835P | |
| 6835 | M | M.Hpyfe74ORF6975P (39% identity) | M.Hpyfe62ORF6835P | |
| 6840 | DNA methyltransferase | |||
| 6840 | DNA methyltransferase | |||
| 6845 | RM | HpyISR6ORF6400P (81% identity) | Hpyfe62ORF6845P | |
| 6850 | carboxylating nicotinate-nucleotide | |||
| 6900 | copper response regulator transcription factor | |||
| 6905 | R | HpyCHN1VP (82% identity) | Hpyfe62ORF6905P | |
| 6910 | EcoRV family type II restriction endonuclease | |||
| 6905 | restriction endonuclease subunit R | |||
| 6910 | R | HpyK105XVP (99% identity) | GATATC | Hpyfe62ORF6915P |
| 6915 | M | M.HpyCOL210ORF6675P (98% identity) | GATATC | M.Hpyfe62ORF6915P |
| 6920 | site-specific DNA-methyltransferase | |||
| 7385 | 144 aa hypothetical protein | |||
| 7390 | R | HpyT027XIVP (99% identity) | TGCA | Hpyfe62ORF7395P |
| 7395 | M | M.HpyP98ORFPP (99% identity) | TGCA | M.Hpyfe62ORF7395P |
| 7400 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe59ORF40P (97% identity) | M.Hpyfe62ORF40P | |
| 50 | R | Hpyfe72ORF40P (97% identity) | Hpyfe62ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 640 | type III restriction endonuclease subunit R | |||
| 645 | R | Hpyfe60ORF655P (95% identity) | Hpyfe62ORF650P | |
| 650 | M | M.Hpyfe125ORF610P (96% identity) | M.Hpyfe62ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| 6915 | Dam family site-specific | |||
| ??? | M | M.HpyOK317ORFHP (95% identity) | M.Hpyfe62ORF6920P | |
| 6925 | R | Hpyfe6ORF6875P (96% identity) | Hpyfe62ORF6920P | |
| 6930 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4020 | NAD(P)H-dependent oxidoreductase | |||
| 4025 | R | HpyYN483GmrSD2P (94% identity) | Hpyfe62GmrSD2P | |
| 4030 | sel1 repeat family protein | |||
| 4605 | 50S ribosomal protein L9 | |||
| 4610 | R | Hpyfe92GmrSD2P (89% identity) | Hpyfe62GmrSDP | |
| 4615 | type I glutamate--ammonia ligase | |||