Helicobacter pylori Hpfe063 |
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Putative Helicobacter pylori Hpfe063 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,604,985 bp
GenBank #: CP094175
REBASE acronym: Hpyfe63
Org_num: 57310
All begin MPG43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | DNA cytosine methyltransferase | |||
| 2985 | M | M.Hpyfe76ORF3125P (95% identity) | M.Hpyfe63ORF2985P | |
| 2990 | S | S.HpyGE5ORF4055P (69% identity) | S.Hpyfe63ORF2985P | |
| 2995 | R | Hpyfe96ORF3030P (97% identity) | Hpyfe63ORF2985P | |
| 3000 | hydroxyethylthiazole kinase | |||
| 3275 | cadmium-translocating P-type ATPase | |||
| 3280 | S | S.HpyGU82AORFKP (97% identity) | CTANNNNNNNNTTG | S.Hpyfe63ORF3280P |
| 3285 | outer membrane beta-barrel protein HofF | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | HpyM5CORFKP (77% identity) | Hpyfe63ORF55P | |
| 60 | 177 aa hypothetical protein | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyMKM1ORF1380P (98% identity) | CYANNNNNNTTC | Hpyfe63ORF290P |
| 295 | S | S1.HpyJA105ORF1110P (98% identity) | S1.Hpyfe63ORF290P | |
| 300 | S | S.HpyK028ORF6850P (92% identity) | S2.Hpyfe63ORF290P | |
| 305 | DNA polymerase I | |||
| 1395 | IceA2 protein | |||
| 1400 | M | M.HpyK005I (98% identity) | CATG | M.Hpyfe63ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1570 | purine-nucleoside phosphorylase | |||
| ??? | R | HpyK051IXP (97% identity) | TCNGA | Hpyfe63ORF1580P |
| 1580 | M | M.HpyK051IX (96% identity) | TCNGA | M.Hpyfe63ORF1580P |
| 1585 | Hop family adhesin HopQ | |||
| 1850 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1855 | M | M.HpyMA10XIII (99% identity) | GCGC | M.Hpyfe63ORF1855P |
| 1860 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | Hpyfe80ORF2045P (97% identity) | TCNNGA | Hpyfe63ORF2045P |
| 2045 | M | M.Hpyfe88ORF2055P (99% identity) | TCNNGA | M.Hpyfe63ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2705 | ATP-dependent helicase | |||
| 2710 | M | M.HpySG08XIII (97% identity) | GTNNAC | M.Hpyfe63ORF2710P |
| 2715 | R | HpyTW16XIP (98% identity) | GTNNAC | Hpyfe63ORF2710P |
| 2720 | flagellar hook protein FlgE | |||
| 2970 | phosphatase PAP2 family protein | |||
| 2975 | R | HpyID10ORF4140P (98% identity) | GGCC | Hpyfe63ORF2980P |
| 2980 | M | M.Hpy334ORFRP (99% identity) | GGCC | M.Hpyfe63ORF2980P |
| 2985 | type I restriction-modification system subunit | |||
| 3820 | outer membrane protein | |||
| 3825 | RM | HpyF94ORF571P (86% identity) | Hpyfe63ORF3825P | |
| 3830 | (Fe-S)-binding protein | |||
| 4630 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4635 | R | HpyMA21XIIP (98% identity) | GTAC | Hpyfe63ORF4640P |
| 4640 | M | M.Hpyfe62ORF4655P (99% identity) | GTAC | M.Hpyfe63ORF4640P |
| 4645 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4755 | catalase | |||
| 4760 | R | Hpybs3ORFPP (98% identity) | ACGT | Hpyfe63ORF4765P |
| 4765 | M | M.Hpyfe124ORF4660P (98% identity) | ACGT | M.Hpyfe63ORF4765P |
| 4770 | GIY-YIG nuclease family protein | |||
| 4765 | DNA cytosine methyltransferase | |||
| 4770 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe63ORF4775P |
| 4775 | M | M.HpyTW05III (99% identity) | ACNGT | M.Hpyfe63ORF4775P |
| 4780 | translational GTPase TypA | |||
| 4785 | lipopolysaccharide heptosyltransferase family | |||
| 4790 | M | M.Hpyfe29ORF4865P (98% identity) | ATTAAT | M.Hpyfe63ORF4790P |
| 4795 | Hop family outer membrane protein HopJ/HopK | |||
| 5305 | group I intron-associated PD-(D/E)XK | |||
| 5310 | M | M.HpyDO4ORF1685P (99% identity) | GCNGC | M.Hpyfe63ORF5310P |
| 5315 | translation elongation factor 4 | |||
| 5750 | AAA family ATPase | |||
| 5755 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe63ORF5755P |
| 5760 | R | HpyBT112ORF5860P (97% identity) | CCGG | Hpyfe63ORF5755P |
| 5765 | 204 aa hypothetical protein | |||
| 5765 | 204 aa hypothetical protein | |||
| 5770 | M | M.Hpy28ORF291P (99% identity) | TCGA | M.Hpyfe63ORF5770P |
| 5775 | exodeoxyribonuclease VII large subunit | |||
| 6180 | pseudaminic acid synthase | |||
| 6185 | R | R2.HpyCHN8ORF920P (98% identity) | R1.Hpyfe63ORF6195P | |
| 6190 | R | R2.Hpyfe122ORF6200P (97% identity) | R2.Hpyfe63ORF6195P | |
| 6195 | M | M2.HpyMA03ORF935P (97% identity) | M1.Hpyfe63ORF6195P | |
| 6200 | M | M.HpyFD506ORFL1P (99% identity) | M2.Hpyfe63ORF6195P | |
| 6205 | IS1595 family transposase | |||
| 6465 | ACP S-malonyltransferase | |||
| 6475 | R | HpyTW10VIP (96% identity) | GATC | Hpyfe63ORF6480P |
| 6480 | M | M.Hpyfe75ORF6725P (98% identity) | GATC | M.Hpyfe63ORF6480P |
| 6485 | alpha-1,2-fucosyltransferase | |||
| 6940 | copper response regulator transcription factor | |||
| 6945 | R | Hpyfe24ORF7090P (83% identity) | Hpyfe63ORF6945P | |
| 6950 | EcoRV family type II restriction endonuclease | |||
| 6945 | restriction endonuclease subunit R | |||
| 6950 | R | HpyMA12ORF205P (99% identity) | Hpyfe63ORF6955P | |
| 6955 | M | M.HpyPU001ORF6685P (95% identity) | M.Hpyfe63ORF6955P | |
| 6960 | site-specific DNA-methyltransferase | |||
| 7420 | 89 aa hypothetical protein | |||
| 7425 | R | HpyOK13ORFJP (99% identity) | TGCA | Hpyfe63ORF7430P |
| 7430 | M | M.HpyJA109XI (99% identity) | TGCA | M.Hpyfe63ORF7430P |
| 7435 | 67 aa hypothetical protein | |||
| 7585 | DNA cytosine methyltransferase | |||
| 7590 | R | HpyT022XVP (100% identity) | GTSAC | Hpyfe63ORF7595P |
| 7595 | M | M.Hpyfe79ORF7015P (100% identity) | GTSAC | M.Hpyfe63ORF7595P |
| 7600 | HNH endonuclease | |||
| 7595 | site-specific DNA-methyltransferase | |||
| 7600 | R | HpyTW24IXP (98% identity) | CCTC | Hpyfe63ORF7605P |
| 7605 | M | M2.HpySG32IVP (99% identity) | CCTC | M1.Hpyfe63ORF7605P |
| 7610 | M | M1.HpyQ59ORFFP (98% identity) | CCTC | M2.Hpyfe63ORF7605P |
| 7615 | agmatine deiminase | |||
| 7660 | DNA methyltransferase | |||
| 7665 | R | Hpyfe75ORF7180P (98% identity) | GANTC | Hpyfe63ORF7670P |
| 7670 | M | M.HpyAR8X (99% identity) | GANTC | M.Hpyfe63ORF7670P |
| 7675 | DNA methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe62ORF40P (97% identity) | M.Hpyfe63ORF40P | |
| 45 | R | Hpyfe33ORF40P (97% identity) | Hpyfe63ORF40P | |
| 50 | 717 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | Hpyfe78ORF6365P (90% identity) | Hpyfe63ORF635P | |
| 635 | M | M.HpyF002XVI (95% identity) | M.Hpyfe63ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 6955 | Dam family site-specific | |||
| ??? | M | M.HpySG09ORF200P (97% identity) | M.Hpyfe63ORF6960P | |
| 6965 | R | HpyTW10ORF200P (95% identity) | Hpyfe63ORF6960P | |
| 6970 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4005 | NAD(P)H-dependent oxidoreductase | |||
| 4010 | R | HpyAR8GmrSD2P (94% identity) | Hpyfe63GmrSDP | |
| 4015 | sel1 repeat family protein | |||
| 4590 | 50S ribosomal protein L9 | |||
| 4595 | R | HpyOK06GmrSD2P (88% identity) | Hpyfe63GmrSD2P | |
| 4600 | type I glutamate--ammonia ligase | |||