Helicobacter pylori Hpfe065 |
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Putative Helicobacter pylori Hpfe065 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,568,330 bp
GenBank #: CP094117
REBASE acronym: Hpyfe65
Org_num: 57312
All begin MPG34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2975 | phosphatase PAP2 family protein | |||
| 2980 | M | M.Hpyfe56ORF3060P (92% identity) | M.Hpyfe65ORF2980P | |
| 2985 | S | S.HpyHP22ORF7495P (98% identity) | S.Hpyfe65ORF2980P | |
| 2990 | R | HpySG02ORF2100P (96% identity) | Hpyfe65ORF2980P | |
| 2995 | hydroxyethylthiazole kinase | |||
| 7460 | M48 family metallopeptidase | |||
| 7465 | R | Hpybs3ORFKP (97% identity) | CRTANNNNNNNTC | Hpyfe65ORF7470P |
| 7470 | M | M.Hpyfe4ORF7425P (96% identity) | CRTANNNNNNNTC | M.Hpyfe65ORF7470P |
| 7475 | S | S.Hpyfe5ORF7635P (98% identity) | CRTANNNNNNNTC | S.Hpyfe65ORF7470P |
| 7480 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 714 aa hypothetical protein | |||
| 55 | RM | Hpy72ORF1424P (61% identity) | Hpyfe65ORF55AP | |
| 60 | RM | Hpyfe59ORF55P (18% identity) | Hpyfe65ORF55BP | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyTW07VIP (97% identity) | CCATC | Hpyfe65ORF140P |
| 140 | M | M1.Hpyfe49ORF135P (99% identity) | CCATC | M1.Hpyfe65ORF140P |
| 145 | M | M1.HpyT026IV (99% identity) | CCATC | M2.Hpyfe65ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyCHN3ORF7135P (98% identity) | CYANNNNNNTTC | Hpyfe65ORF280P |
| 285 | S | S1.HpyTW23ORF6895P (98% identity) | S1.Hpyfe65ORF280P | |
| 290 | S | S2.HpyOK301ORFFP (81% identity) | S2.Hpyfe65ORF280P | |
| 295 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | HpyOK312ORFMP (89% identity) | CATG | Hpyfe65ORF1415P |
| 1415 | M | M.HpyHP22ORF4195P (99% identity) | CATG | M.Hpyfe65ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyMA10XIII (97% identity) | GCGC | M.Hpyfe65ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe65ORF2060P |
| 2060 | M | M.Hpyfe3ORF2070P (99% identity) | TCNNGA | M.Hpyfe65ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.HpyF216ORFJP (98% identity) | GTNNAC | M.Hpyfe65ORF2715P |
| 2720 | R | Hpyfe13ORF2880P (90% identity) | GTNNAC | Hpyfe65ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 3775 | 3-5 exonuclease | |||
| 3780 | R | HpySP706VIP (100% identity) | CCNNGG | Hpyfe65ORF3785P |
| 3785 | M | M.HpyOK307ORFVP (99% identity) | CCNNGG | M.Hpyfe65ORF3785P |
| 3790 | 3-5 exonuclease | |||
| 3870 | outer membrane protein | |||
| 3875 | RM | HpyPF57ORF3445P (93% identity) | Hpyfe65ORF3875P | |
| 3880 | (Fe-S)-binding protein | |||
| 4685 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4690 | R | Hpyfe83ORF2905P (98% identity) | GTAC | Hpyfe65ORF4695P |
| 4695 | M | M.HpyK053IX (98% identity) | GTAC | M.Hpyfe65ORF4695P |
| 4700 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4780 | catalase | |||
| 4785 | R | HpyOK307ORFNP (98% identity) | ACGT | Hpyfe65ORF4790P |
| 4790 | M | M.Hpyfe5ORF4970P (99% identity) | ACGT | M.Hpyfe65ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.Hpyfe22ORF4945P (98% identity) | ATTAAT | M.Hpyfe65ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5510 | 125 aa hypothetical protein | |||
| 5515 | M | M.Hpyfe5ORF5695P (99% identity) | CTNAG | M.Hpyfe65ORF5515P |
| 5520 | R | Hpy55ORF346P (99% identity) | CTNAG | Hpyfe65ORF5515P |
| 5525 | polysaccharide deacetylase | |||
| 5755 | AAA family ATPase | |||
| 5760 | M | M.HpyTW07II (100% identity) | CCGG | M.Hpyfe65ORF5760P |
| 5765 | R | HpyH1IIIP (89% identity) | CCGG | Hpyfe65ORF5760P |
| 5770 | exodeoxyribonuclease VII large subunit | |||
| 6575 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6580 | M | M.HpyF75ORF153P (97% identity) | GATC | M.Hpyfe65ORF6580P |
| 6585 | R | HpyUM111ORF1335P (96% identity) | GATC | Hpyfe65ORF6580P |
| 6595 | ACP S-malonyltransferase | |||
| 6775 | sodium/proline symporter PutP | |||
| 6780 | M | M1.Hpyfe58ORF7035P (78% identity) | M1.Hpyfe65ORF6780P | |
| 6785 | M | M2.Hpyfe24ORF6965P (98% identity) | CCTC | M2.Hpyfe65ORF6780P |
| 6790 | agmatine deiminase | |||
| 6835 | DNA methyltransferase | |||
| 6840 | R | Hpyfe49ORF7045P (97% identity) | GANTC | Hpyfe65ORF6845P |
| 6845 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.Hpyfe65ORF6845P |
| 6850 | N-6 DNA methylase | |||
| 6845 | site-specific DNA-methyltransferase | |||
| 6850 | RM | Hpyfe96ORF6940P (91% identity) | Hpyfe65ORF6850P | |
| 6855 | carboxylating nicotinate-nucleotide | |||
| 7365 | 101 aa hypothetical protein | |||
| 7370 | R | HpyUM037VIIIP (98% identity) | TGCA | Hpyfe65ORF7375P |
| 7375 | M | M.Hpyfe76ORF7355P (99% identity) | TGCA | M.Hpyfe65ORF7375P |
| 7380 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy3sORF40P (94% identity) | M.Hpyfe65ORF40P | |
| 45 | R | HpyTW02ORF6990P (98% identity) | Hpyfe65ORF40P | |
| 50 | 714 aa hypothetical protein | |||
| 640 | biotin synthase | |||
| 645 | R | Hpyfe120ORF630P (93% identity) | Hpyfe65ORF650P | |
| 650 | M | M.HpySG05ORF6700P (97% identity) | M.Hpyfe65ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| 6905 | copper response regulator transcription factor | |||
| 6910 | M | M.Hpyfe7ORF6895P (98% identity) | M.Hpyfe65ORF6910P | |
| 6915 | R | HpySG38ORF205P (96% identity) | Hpyfe65ORF6910P | |
| 6920 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4055 | NAD(P)H-dependent oxidoreductase | |||
| 4060 | R | HpyYN483GmrSD2P (96% identity) | Hpyfe65GmrSD2P | |
| 4065 | sel1 repeat family protein | |||
| 4645 | 50S ribosomal protein L9 | |||
| 4650 | R | Hpyfe95GmrSDP (89% identity) | Hpyfe65GmrSDP | |
| 4655 | type I glutamate--ammonia ligase | |||