Helicobacter pylori Hpfe066 |
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Putative Helicobacter pylori Hpfe066 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,586,299 bp
GenBank #: CP094116
REBASE acronym: Hpyfe66
Org_num: 57313
All begin MPG07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4855 | type I restriction endonuclease | |||
| 4860 | R | HpyJSHR31ORF9580P (68% identity) | CCANNNNNNTC | Hpyfe66ORF4865P |
| 4865 | M | M.HpyK052ORF2235P (98% identity) | CCANNNNNNTC | M.Hpyfe66ORF4865P |
| 4870 | S | S.HpySG26ORF3930P (99% identity) | CCANNNNNNTC | S.Hpyfe66ORF4865P |
| 4880 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | HpyOK306ORFIP (93% identity) | Hpyfe66ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpySG07ORF6810P (97% identity) | CYANNNNNNTTC | Hpyfe66ORF270P |
| 275 | S | S.Hpyfe1ORF445P (69% identity) | S.Hpyfe66ORF270P | |
| 280 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpyPF57IP (97% identity) | CATG | Hpyfe66ORF1405P |
| 1405 | M | M.HpyK033I (97% identity) | CATG | M.Hpyfe66ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1590 | purine-nucleoside phosphorylase | |||
| 1595 | R | Hpyfe58ORF1625P (99% identity) | TCNGA | Hpyfe66ORF1600P |
| 1600 | M | M.HpyH1X (99% identity) | TCNGA | M.Hpyfe66ORF1600P |
| 1605 | Hop family adhesin HopQ | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpySW10XVI (96% identity) | M.Hpyfe66ORF1875P | |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | HpyF221ORFPP (100% identity) | TCNNGA | Hpyfe66ORF2060P |
| 2060 | M | M.Hpyfe120ORF2030P (99% identity) | TCNNGA | M.Hpyfe66ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2695 | ATP-dependent helicase | |||
| 2700 | M | M.Hpyfe86ORF2720P (98% identity) | GTNNAC | M.Hpyfe66ORF2700P |
| 2705 | R | Hpy199ORFRP (96% identity) | GTNNAC | Hpyfe66ORF2700P |
| 2710 | flagellar hook protein FlgE | |||
| 3730 | (Fe-S)-binding protein | |||
| 3735 | RM | Hpyfe114ORF3790P (92% identity) | Hpyfe66ORF3735P | |
| 3740 | outer membrane protein | |||
| 4745 | catalase | |||
| 4750 | R | Hpyfe10ORF4925P (99% identity) | ACGT | Hpyfe66ORF4755P |
| 4755 | M | M.Hpyfe61ORF5000P (99% identity) | ACGT | M.Hpyfe66ORF4755P |
| 4760 | GIY-YIG nuclease family protein | |||
| 4755 | DNA cytosine methyltransferase | |||
| 4760 | R | Hpyfe100ORF4790P (99% identity) | ACNGT | Hpyfe66ORF4765P |
| 4765 | M | M.HpyK020II (99% identity) | ACNGT | M.Hpyfe66ORF4765P |
| 4770 | translational GTPase TypA | |||
| 4775 | 139 aa hypothetical protein | |||
| 4780 | M | M.HpyK116ORF2590P (97% identity) | ATTAAT | M.Hpyfe66ORF4780P |
| 4785 | Hop family outer membrane protein HopJ/HopK | |||
| 5590 | 125 aa hypothetical protein | |||
| 5595 | M | M.HpyUM077ORF1015P (98% identity) | CTNAG | M.Hpyfe66ORF5595P |
| 5600 | R | HpyJ010VIIP (97% identity) | CTNAG | Hpyfe66ORF5595P |
| 5605 | polysaccharide deacetylase | |||
| 5840 | AAA family ATPase | |||
| 5845 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe66ORF5845P |
| 5850 | R | Hpyfe63ORF5755P (93% identity) | CCGG | Hpyfe66ORF5845P |
| 5855 | exodeoxyribonuclease VII large subunit | |||
| 6650 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6655 | M | M.HpyI017IX (94% identity) | GATC | M.Hpyfe66ORF6655P |
| 6660 | HTH domain-containing protein | |||
| 6855 | sodium/proline symporter PutP | |||
| 6860 | M | M2.HpyHP32IVP (99% identity) | M1.Hpyfe66ORF6860P | |
| 6865 | M | M.HpyGU71CORFAP (99% identity) | CCTC | M2.Hpyfe66ORF6860P |
| 6870 | agmatine deiminase | |||
| 6910 | S41 family peptidase | |||
| 6915 | RM | HpySG18ORF275P (93% identity) | Hpyfe66ORF6915P | |
| 6920 | carboxylating nicotinate-nucleotide | |||
| 6970 | copper response regulator transcription factor | |||
| 6975 | R | Hpy6ORF14380P (99% identity) | GAAGA | Hpyfe66ORF6980P |
| 6980 | M | M2.HpyK117VI (99% identity) | GAAGA | M1.Hpyfe66ORF6980P |
| 6985 | M | M2.Hpyfe19ORF7045P (99% identity) | GAAGA | M2.Hpyfe66ORF6980P |
| 6990 | restriction endonuclease | |||
| 7430 | translation elongation factor Ts | |||
| 7435 | R | Hpyfe59ORF7460P (96% identity) | TGCA | Hpyfe66ORF7440P |
| 7440 | M | M.HpySG07XI (97% identity) | TGCA | M.Hpyfe66ORF7440P |
| 7445 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy90ORF1448P (97% identity) | M.Hpyfe66ORF40P | |
| 45 | R | HpyKG10ORF7535P (94% identity) | Hpyfe66ORF40P | |
| 50 | 717 aa hypothetical protein | |||
| 620 | type III restriction endonuclease subunit R | |||
| 625 | R | HpyU425ORF6595P (96% identity) | Hpyfe66ORF630P | |
| 630 | M | M.Hpy1100ORFPP (97% identity) | M.Hpyfe66ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2945 | type I glutamate--ammonia ligase | |||
| 2950 | R | HpyUM077GmrSDP (82% identity) | Hpyfe66GmrSD2P | |
| 2955 | 50S ribosomal protein L9 | |||
| 3545 | sel1 repeat family protein | |||
| 3550 | R | HpyGU71CGmrSDP (93% identity) | Hpyfe66GmrSDP | |
| 3555 | NAD(P)H-dependent oxidoreductase | |||