Helicobacter pylori Hpfe068 |
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Putative Helicobacter pylori Hpfe068 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,566,753 bp
GenBank #: CP094115
REBASE acronym: Hpyfe68
Org_num: 57314
All begin MPG80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | phosphatase PAP2 family protein | |||
| 2955 | M | M.HpyTW21XII (96% identity) | CTANNNNNNNTTC | M.Hpyfe68ORF2955P |
| 2960 | S | S.HpyV006ORF3195P (96% identity) | CTANNNNNNNTTC | S.Hpyfe68ORF2955P |
| 2965 | R | Hpyfe55ORF4640P (97% identity) | CTANNNNNNNTTC | Hpyfe68ORF2955P |
| 2970 | hydroxyethylthiazole kinase | |||
| 4825 | type I restriction endonuclease | |||
| 4830 | R | Hpyfe8ORF2045P (96% identity) | CAGNNNNNTC | Hpyfe68ORF4835P |
| 4835 | M | M.HpyK022IX (97% identity) | CAGNNNNNTC | M.Hpyfe68ORF4835P |
| 4840 | S | S.HpyTW07X (99% identity) | CAGNNNNNTC | S.Hpyfe68ORF4835P |
| 4850 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpysHP34ORF1685P (87% identity) | Hpyfe68ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe93ORF280P (97% identity) | CYANNNNNNTTC | Hpyfe68ORF265P |
| 270 | S | S.HpyK043ORF6905P (68% identity) | S.Hpyfe68ORF265P | |
| 275 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpy21ORF1158P (94% identity) | CATG | Hpyfe68ORF1405P |
| 1405 | M | M.HpyK114I (98% identity) | CATG | M.Hpyfe68ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyK007X (99% identity) | GCGC | M.Hpyfe68ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2030 | Laminin subunit alpha-2 precursor | |||
| 2035 | R | HpyCHN3ORF5345P (94% identity) | TCNNGA | Hpyfe68ORF2040P |
| 2040 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe68ORF2040P |
| 2045 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2685 | ATP-dependent helicase | |||
| 2690 | M | M.HpySG17IX (98% identity) | GTNNAC | M.Hpyfe68ORF2690P |
| 2695 | R | HpyK007ORF4450P (90% identity) | GTNNAC | Hpyfe68ORF2690P |
| 2700 | flagellar hook protein FlgE | |||
| 3765 | (Fe-S)-binding protein | |||
| 3770 | RM | Hpyfe11ORF4385P (93% identity) | Hpyfe68ORF3770P | |
| 3775 | outer membrane protein | |||
| 3845 | 3-5 exonuclease | |||
| 3850 | M | M.HpyTW16VI (100% identity) | CCNNGG | M.Hpyfe68ORF3850P |
| 3855 | R | Hpyfe122ORF3700P (99% identity) | CCNNGG | Hpyfe68ORF3850P |
| 3860 | 3-5 exonuclease | |||
| 4725 | catalase | |||
| 4730 | R | HpyUM065ORF7975P (98% identity) | ACGT | Hpyfe68ORF4735P |
| 4735 | M | M.HpySG18ORF4970P (99% identity) | ACGT | M.Hpyfe68ORF4735P |
| 4740 | translational GTPase TypA | |||
| 4745 | lipopolysaccharide heptosyltransferase family | |||
| 4750 | M | M.HpyTW09ORF2345P (96% identity) | ATTAAT | M.Hpyfe68ORF4750P |
| 4755 | Hop family outer membrane protein HopJ/HopK | |||
| 5705 | AAA family ATPase | |||
| 5710 | M | M.Hpyfe39ORF5855P (99% identity) | CCGG | M.Hpyfe68ORF5710P |
| 5715 | R | Hpy4125ORFKP (96% identity) | CCGG | Hpyfe68ORF5710P |
| 5720 | 204 aa hypothetical protein | |||
| 5720 | 204 aa hypothetical protein | |||
| 5725 | M | M.Hpyfe37ORF5745P (98% identity) | TCGA | M.Hpyfe68ORF5725P |
| 5730 | exodeoxyribonuclease VII large subunit | |||
| 6540 | alpha-1,2-fucosyltransferase | |||
| 6545 | M | M.Hpyfe63ORF6480P (97% identity) | GATC | M.Hpyfe68ORF6545P |
| 6550 | R | Hpyfe103ORF6765P (96% identity) | GATC | Hpyfe68ORF6545P |
| 6560 | ACP S-malonyltransferase | |||
| 6735 | sodium/proline symporter PutP | |||
| 6740 | M | M1.Hpyfe52ORF6755P (98% identity) | M1.Hpyfe68ORF6740P | |
| 6745 | M | M1.HpyF221ORFBP (99% identity) | CCTC | M2.Hpyfe68ORF6740P |
| 6750 | outer membrane protein | |||
| 6795 | DNA methyltransferase | |||
| 6800 | R | HpyR09IXP (48% identity) | Hpyfe68ORF6815P | |
| 6805 | 245 aa hypothetical protein | |||
| 6810 | 56 aa hypothetical protein | |||
| 6815 | M | M.Hpyfe77ORF7155P (40% identity) | M.Hpyfe68ORF6815P | |
| 6820 | N-6 DNA methylase | |||
| 6815 | site-specific DNA-methyltransferase | |||
| 6820 | RM | HpyF94ORF45P (90% identity) | Hpyfe68ORF6820P | |
| 6825 | carboxylating nicotinate-nucleotide | |||
| 6875 | copper response regulator transcription factor | |||
| 6880 | R | HpyK027VP (98% identity) | GAAGA | Hpyfe68ORF6885P |
| 6885 | M | M2.HpyOK34ORFMP (99% identity) | GAAGA | M1.Hpyfe68ORF6885P |
| 6890 | M | M1.HpyBS06ORF810P (99% identity) | GAAGA | M2.Hpyfe68ORF6885P |
| 6895 | site-specific DNA-methyltransferase | |||
| 7345 | translation elongation factor Ts | |||
| 7350 | R | HpyID8XIVP (99% identity) | TGCA | Hpyfe68ORF7355P |
| 7355 | M | M.HpysHP34ORF1860P (99% identity) | TGCA | M.Hpyfe68ORF7355P |
| 7360 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyAL5ORF7035P (92% identity) | M.Hpyfe68ORF40P | |
| 45 | R | Hpyfe115ORF40P (96% identity) | Hpyfe68ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 610 | type III restriction endonuclease subunit R | |||
| 615 | R | HpyDU8AORFUP (91% identity) | Hpyfe68ORF620P | |
| 620 | M | M.HpyK009ORF6595P (97% identity) | M.Hpyfe68ORF620P | |
| 625 | ABC transporter ATP-binding protein/permease | |||
| 6890 | site-specific DNA-methyltransferase | |||
| 6895 | M | M.Hpybs3ORFXP (97% identity) | M.Hpyfe68ORF6895P | |
| 6900 | R | Hpyfe80ORF6895P (96% identity) | Hpyfe68ORF6895P | |
| 6905 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4005 | NAD(P)H-dependent oxidoreductase | |||
| 4010 | R | HpyK047GmrSD2P (95% identity) | Hpyfe68GmrSD2P | |
| 4015 | sel1 repeat family protein | |||
| 4590 | 50S ribosomal protein L9 | |||
| 4595 | R | HpyK046GmrSDP (88% identity) | Hpyfe68GmrSDP | |
| 4600 | type I glutamate--ammonia ligase | |||