Helicobacter pylori Hpfe069 |
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Putative Helicobacter pylori Hpfe069 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,580,144 bp
GenBank #: CP094113
REBASE acronym: Hpyfe69
Org_num: 57315
All begin MPG48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4425 | outer membrane beta-barrel protein HofF | |||
| 4430 | S | S.Hpyfe70ORF4425P (100% identity) | CCANNNNNNGTT | S.Hpyfe69ORF4430P |
| 4435 | cadmium-translocating P-type ATPase | |||
| 4985 | motility associated factor glycosyltransferase | |||
| 4990 | R | Hpyfe70ORF4990P (100% identity) | Hpyfe69ORF4995P | |
| 4995 | M | M.Hpyfe70ORF4990P (100% identity) | M.Hpyfe69ORF4995P | |
| 5000 | S | S.Hpyfe70ORF4990P (100% identity) | S.Hpyfe69ORF4995P | |
| 5010 | RNA degradosome polyphosphate kinase | |||
| 7570 | M48 family metallopeptidase | |||
| 7575 | R | Hpyfe70ORF7585P (100% identity) | CRTANNNNNNNTC | Hpyfe69ORF7580P |
| 7580 | M | M.Hpyfe70ORF7585P (100% identity) | CRTANNNNNNNTC | M.Hpyfe69ORF7580P |
| 7585 | S | S.Hpyfe70ORF7585P (100% identity) | CRTANNNNNNNTC | S.Hpyfe69ORF7580P |
| 7590 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe70ORF55P (100% identity) | Hpyfe69ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe70ORF135P (100% identity) | CCATC | Hpyfe69ORF135P |
| 135 | M | M2.HpysHP34ORF1580P (100% identity) | CCATC | M1.Hpyfe69ORF135P |
| 140 | M | M2.Hpyfe70ORF135P (100% identity) | CCATC | M2.Hpyfe69ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | R | Hpyfe70ORF280P (100% identity) | GGATG | Hpyfe69ORF280P |
| 280 | M | M1.Hpyfe70ORF280P (100% identity) | GGATG | M1.Hpyfe69ORF280P |
| 285 | M | M2.Hpyfe73ORF275P (100% identity) | GGATG | M2.Hpyfe69ORF280P |
| 290 | C | C.Hpyfe73ORF275P (100% identity) | C.Hpyfe69ORF280P | |
| 295 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpyfe70ORF1405P (100% identity) | CATG | Hpyfe69ORF1405P |
| 1405 | M | M.Hpyfe70ORF1405P (100% identity) | CATG | M.Hpyfe69ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1575 | purine-nucleoside phosphorylase | |||
| 1580 | R | Hpyfe70ORF1585P (100% identity) | TCNGA | Hpyfe69ORF1585P |
| 1585 | M | M.Hpyfe70ORF1585P (100% identity) | TCNGA | M.Hpyfe69ORF1585P |
| 1590 | purine-nucleoside phosphorylase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.Hpyfe70ORF1875P (100% identity) | GCGC | M.Hpyfe69ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe69ORF2065P |
| 2065 | M | M.Hpyfe70ORF2065P (100% identity) | TCNNGA | M.Hpyfe69ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2815 | ATP-dependent helicase | |||
| 2820 | M | M.Hpyfe70ORF2820P (100% identity) | GTNNAC | M.Hpyfe69ORF2820P |
| 2825 | R | Hpyfe70ORF2820P (100% identity) | GTNNAC | Hpyfe69ORF2820P |
| 2830 | flagellar hook protein FlgE | |||
| 3025 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3030 | M | M.Hpyfe70ORF3030P (100% identity) | GTAC | M.Hpyfe69ORF3030P |
| 3035 | R | Hpyfe70ORF3030P (100% identity) | GTAC | Hpyfe69ORF3030P |
| 3040 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3840 | (Fe-S)-binding protein | |||
| 3845 | RM | Hpyfe70ORF3840P (100% identity) | Hpyfe69ORF3845P | |
| 3850 | outer membrane protein | |||
| 4880 | catalase | |||
| 4885 | R | Hpyfe70ORF4885P (100% identity) | ACGT | Hpyfe69ORF4890P |
| 4890 | M | M.Hpyfe70ORF4885P (100% identity) | ACGT | M.Hpyfe69ORF4890P |
| 4895 | GIY-YIG nuclease family protein | |||
| 4890 | DNA cytosine methyltransferase | |||
| 4895 | R | Hpyfe70ORF4895P (100% identity) | ACNGT | Hpyfe69ORF4900P |
| 4900 | M | M.Hpyfe70ORF4895P (100% identity) | ACNGT | M.Hpyfe69ORF4900P |
| 4905 | translational GTPase TypA | |||
| 4910 | lipopolysaccharide heptosyltransferase family | |||
| 4915 | M | M.Hpyfe70ORF4910P (100% identity) | ATTAAT | M.Hpyfe69ORF4915P |
| 4920 | Hop family outer membrane protein HopJ/HopK | |||
| 5875 | AAA family ATPase | |||
| 5880 | M | M.Hpyfe70ORF5880P (100% identity) | CCGG | M.Hpyfe69ORF5880P |
| 5885 | R | Hpyfe70ORF5880P (100% identity) | CCGG | Hpyfe69ORF5880P |
| 5890 | 204 aa hypothetical protein | |||
| 5890 | 204 aa hypothetical protein | |||
| 5895 | M | M.Hpyfe70ORF5895P (100% identity) | TCGA | M.Hpyfe69ORF5895P |
| 5900 | exodeoxyribonuclease VII large subunit | |||
| 6300 | pseudaminic acid synthase | |||
| 6305 | R | R1.Hpyfe70ORF6305P (100% identity) | R1.Hpyfe69ORF6305P | |
| 6310 | R | R2.Hpyfe70ORF6305P (100% identity) | R2.Hpyfe69ORF6305P | |
| 6315 | elongation factor P | |||
| 6700 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6705 | M | M.Hpyfe70ORF6705P (100% identity) | GATC | M.Hpyfe69ORF6705P |
| 6710 | HTH domain-containing protein | |||
| 6870 | sodium/proline symporter PutP | |||
| 6875 | M | M1.Hpyfe70ORF6875P (100% identity) | M1.Hpyfe69ORF6875P | |
| 6880 | M | M2.Hpyfe70ORF6875P (100% identity) | CCTC | M2.Hpyfe69ORF6875P |
| 6885 | agmatine deiminase | |||
| 6925 | S41 family peptidase | |||
| 6930 | RM | HpyOK30ORFLP (92% identity) | Hpyfe69ORF6930P | |
| 6935 | carboxylating nicotinate-nucleotide | |||
| 6985 | copper response regulator transcription factor | |||
| 6990 | R | Hpyfe70ORF7000P (100% identity) | GAAGA | Hpyfe69ORF6995P |
| 6995 | M | M1.Hpyfe70ORF7000P (100% identity) | GAAGA | M1.Hpyfe69ORF6995P |
| 7000 | M | M2.Hpyfe70ORF7000P (100% identity) | GAAGA | M2.Hpyfe69ORF6995P |
| 7005 | type II restriction endonuclease | |||
| 7455 | 107 aa hypothetical protein | |||
| 7460 | R | Hpyfe70ORF7470P (100% identity) | TGCA | Hpyfe69ORF7465P |
| 7465 | M | M.Hpyfe70ORF7470P (100% identity) | TGCA | M.Hpyfe69ORF7465P |
| 7470 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe70ORF40P (100% identity) | M.Hpyfe69ORF40P | |
| 50 | R | Hpyfe70ORF40P (100% identity) | Hpyfe69ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe70ORF645P (97% identity) | Hpyfe69ORF645P | |
| 645 | M | M.Hpyfe70ORF645P (100% identity) | M.Hpyfe69ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3070 | type I glutamate--ammonia ligase | |||
| 3075 | R | Hpyfe70GmrSD2P (100% identity) | Hpyfe69GmrSD2P | |
| 3080 | 50S ribosomal protein L9 | |||
| 3655 | sel1 repeat family protein | |||
| 3660 | R | Hpyfe70GmrSDP (100% identity) | Hpyfe69GmrSDP | |
| 3665 | NAD(P)H-dependent oxidoreductase | |||