Helicobacter pylori Hpfe071 |
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Putative Helicobacter pylori Hpfe071 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,618,643 bp
GenBank #: CP094110
REBASE acronym: Hpyfe71
Org_num: 57317
All begin MPG24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4715 | hydroxyethylthiazole kinase | |||
| 4720 | R | HpyK019XVP (95% identity) | CAANNNNNNNTTG | Hpyfe71ORF4730P |
| 4725 | S | S.Hpy422ORF3070P (97% identity) | CAANNNNNNNTTG | S.Hpyfe71ORF4730P |
| 4730 | M | M.HpyH390rORF4595P (98% identity) | CAANNNNNNNTTG | M.Hpyfe71ORF4730P |
| 4735 | phosphatase PAP2 family protein | |||
| 4985 | motility associated factor glycosyltransferase | |||
| 4990 | R | HpyMKM5ORF473P (89% identity) | GACNNNNNTG | Hpyfe71ORF4995P |
| 4995 | M | M.Hpyfe114ORF4890P (98% identity) | GACNNNNNTG | M.Hpyfe71ORF4995P |
| 5000 | S | S.HpyT026ORF2315P (99% identity) | GACNNNNNTG | S.Hpyfe71ORF4995P |
| 5010 | RNA degradosome polyphosphate kinase | |||
| 7685 | M48 family metallopeptidase | |||
| 7690 | R | Hpyfe7ORF7500P (96% identity) | CRTANNNNNNNTC | Hpyfe71ORF7695P |
| 7695 | M | M.HpyJA112VII (97% identity) | CRTANNNNNNNTC | M.Hpyfe71ORF7695P |
| 7700 | S | S.HpySH014VI (97% identity) | CRTANNNNNNNTC | S.Hpyfe71ORF7695P |
| 7705 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe113ORF2935P (94% identity) | Hpyfe71ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe124ORF135P (97% identity) | CCATC | Hpyfe71ORF135P |
| 135 | M | M1.Hpyfe55ORF155P (99% identity) | CCATC | M1.Hpyfe71ORF135P |
| 140 | M | M2.Hpyfe61ORF150P (100% identity) | CCATC | M2.Hpyfe71ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | Hpys8ORF1000P (98% identity) | CYANNNNNNTTC | Hpyfe71ORF275P |
| 280 | S | S.Hpy256ORFRP (51% identity) | S.Hpyfe71ORF275AP | |
| 285 | S | S.HpyMA05ORF6975P (48% identity) | S.Hpyfe71ORF275BP | |
| 290 | DNA polymerase I | |||
| 550 | UDP-N-acetylmuramate dehydrogenase | |||
| 555 | M | M.Hpyfe83ORF535P (99% identity) | M.Hpyfe71ORF555P | |
| 560 | R | Hpyfe83ORF535P (99% identity) | Hpyfe71ORF555P | |
| 565 | glycosyltransferase family 8 protein | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | M | M.HpyHP22ORF4195P (99% identity) | CATG | M.Hpyfe71ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1860 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1865 | M | M.HpyK116XII (99% identity) | GCGC | M.Hpyfe71ORF1865P |
| 1870 | 144 aa hypothetical protein | |||
| 2040 | Laminin subunit alpha-2 precursor | |||
| 2045 | R | Hpyfe95ORF5540P (97% identity) | TCNNGA | Hpyfe71ORF2050P |
| 2050 | M | M.Hpyfe78ORF4965P (99% identity) | TCNNGA | M.Hpyfe71ORF2050P |
| 2055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2855 | ATP-dependent helicase | |||
| 2860 | M | M.HpyJA111VIII (97% identity) | GTNNAC | M.Hpyfe71ORF2860P |
| 2865 | R | Hpyfe52ORF2715P (98% identity) | GTNNAC | Hpyfe71ORF2860P |
| 2870 | flagellar hook protein FlgE | |||
| 3055 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3060 | M | M.HpySG17VIII (100% identity) | GTAC | M.Hpyfe71ORF3060P |
| 3065 | R | Hpyfe64ORF5220P (94% identity) | GTAC | Hpyfe71ORF3060P |
| 3070 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3915 | outer membrane protein | |||
| 3920 | RM | Hpyfe89ORF3870P (93% identity) | Hpyfe71ORF3920P | |
| 3925 | (Fe-S)-binding protein | |||
| 4880 | catalase | |||
| 4885 | R | Hpyfe101ORF4780P (99% identity) | ACGT | Hpyfe71ORF4890P |
| 4890 | M | M.Hpyfe81ORF2760P (99% identity) | ACGT | M.Hpyfe71ORF4890P |
| 4895 | GIY-YIG nuclease family protein | |||
| 4890 | DNA cytosine methyltransferase | |||
| 4895 | R | HpyMM08IIP (100% identity) | ACNGT | Hpyfe71ORF4900P |
| 4900 | M | M.Hpyfe37ORF4750P (99% identity) | ACNGT | M.Hpyfe71ORF4900P |
| 4905 | translational GTPase TypA | |||
| 4910 | lipopolysaccharide heptosyltransferase family | |||
| 4915 | M | M.Hpyfe114ORF4805P (98% identity) | ATTAAT | M.Hpyfe71ORF4915P |
| 4920 | Hop family outer membrane protein HopJ/HopK | |||
| 5425 | group I intron-associated PD-(D/E)XK | |||
| 5430 | M | M.Hpyfe29ORF5375P (100% identity) | GCNGC | M.Hpyfe71ORF5430P |
| 5435 | translation elongation factor 4 | |||
| 5620 | 125 aa hypothetical protein | |||
| 5625 | M | M.Hpyfe17ORF5490P (99% identity) | CTNAG | M.Hpyfe71ORF5625P |
| 5630 | R | HpyF228ORF3440P (98% identity) | CTNAG | Hpyfe71ORF5625P |
| 5635 | polysaccharide deacetylase | |||
| 5865 | AAA family ATPase | |||
| 5870 | M | M.Hpyfe28ORF5710P (100% identity) | CCGG | M.Hpyfe71ORF5870P |
| 5875 | R | HpyJSHR6ORF11280P (98% identity) | CCGG | Hpyfe71ORF5870P |
| 5880 | 204 aa hypothetical protein | |||
| 5880 | 204 aa hypothetical protein | |||
| 5885 | M | M.HpyCHN5IX (99% identity) | TCGA | M.Hpyfe71ORF5885P |
| 5890 | exodeoxyribonuclease VII large subunit | |||
| 6570 | HTH domain-containing protein | |||
| 6575 | M | M.HpyP82ORFKP (97% identity) | GATC | M.Hpyfe71ORF6575P |
| 6580 | alpha-1,2-fucosyltransferase | |||
| 6620 | glycosyltransferase | |||
| 6625 | R | Hpyfe81ORF1020P (99% identity) | Hpyfe71ORF6630P | |
| 6630 | M | M.HpyK053XVI (99% identity) | M.Hpyfe71ORF6630P | |
| 6635 | methyl-accepting chemotaxis protein TlpB | |||
| 6980 | sodium/proline symporter PutP | |||
| 6985 | M | M2.HpyHP32IVP (98% identity) | M1.Hpyfe71ORF6985P | |
| 6990 | M | M1.Hpyfe81ORF750P (99% identity) | CCTC | M2.Hpyfe71ORF6985P |
| 6995 | agmatine deiminase | |||
| 7040 | DNA methyltransferase | |||
| 7045 | R | Hpyfe29ORF6865P (96% identity) | GANTC | Hpyfe71ORF7050P |
| 7050 | M | M.Hpyfe64ORF7055P (99% identity) | GANTC | M.Hpyfe71ORF7050P |
| 7055 | N-6 DNA methylase | |||
| 7050 | site-specific DNA-methyltransferase | |||
| 7055 | RM | HpySH010ORF6650P (88% identity) | Hpyfe71ORF7055P | |
| 7060 | carboxylating nicotinate-nucleotide | |||
| 7575 | DUF5343 domain-containing protein | |||
| 7580 | M | M.Hpyfe51ORF7610P (97% identity) | M.Hpyfe71ORF7580P | |
| 7585 | type II restriction endonuclease | |||
| 7580 | DNA cytosine methyltransferase | |||
| 7585 | R | HpyCH4V (99% identity) | TGCA | Hpyfe71ORF7590P |
| 7590 | M | M.Hpyfe33ORF7390P (99% identity) | TGCA | M.Hpyfe71ORF7590P |
| 7595 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyML3ORFDP (97% identity) | M.Hpyfe71ORF40P | |
| 50 | R | HpyT029ORF7135P (97% identity) | Hpyfe71ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 620 | biotin synthase | |||
| 625 | R | HpyDU8AORFUP (95% identity) | Hpyfe71ORF630P | |
| 630 | M | M.Hpyfe97ORF665P (97% identity) | M.Hpyfe71ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7110 | copper response regulator transcription factor | |||
| ??? | M | M.HpyK112ORF200P (97% identity) | M.Hpyfe71ORF7115P | |
| 7120 | R | HpyMA05ORF200P (96% identity) | Hpyfe71ORF7115P | |
| 7125 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3100 | type I glutamate--ammonia ligase | |||
| 3105 | R | Hpy51NGmrSDP (89% identity) | Hpyfe71GmrSD2P | |
| 3110 | 50S ribosomal protein L9 | |||
| 3680 | sel1 repeat family protein | |||
| 3685 | R | HpyK002GmrSD2P (96% identity) | Hpyfe71GmrSDP | |
| 3690 | NAD(P)H-dependent oxidoreductase | |||