Helicobacter pylori Hpfe073 |
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Putative Helicobacter pylori Hpfe073 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,607,927 bp
GenBank #: CP094108
REBASE acronym: Hpyfe73
Org_num: 57319
All begin MPG45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4335 | outer membrane beta-barrel protein HofF | |||
| 4340 | S | S.Hpy928ORFSP (92% identity) | S.Hpyfe73ORF4340P | |
| 4345 | cadmium-translocating P-type ATPase | |||
| 4635 | hydroxyethylthiazole kinase | |||
| 4640 | R | Hpyfe103ORF4610P (96% identity) | GAANNNNNNNTAGA | Hpyfe73ORF4650P |
| 4645 | S | S.Hpyfe11ORF4920P (94% identity) | GAANNNNNNNTAGA | S.Hpyfe73ORF4650P |
| 4650 | M | M.HpyMA05ORF4250P (97% identity) | GAANNNNNNNTAGA | M.Hpyfe73ORF4650P |
| 4655 | type I restriction endonuclease | |||
| 7705 | M48 family metallopeptidase | |||
| 7710 | R | HpyUM085ORF3775P (96% identity) | CCANNNNNNNTC | Hpyfe73ORF7715P |
| 7715 | M | M.HpyK016ORF7195P (98% identity) | CCANNNNNNNTC | M.Hpyfe73ORF7715P |
| 7720 | S | S.HpyTW04XII (96% identity) | CCANNNNNNNTC | S.Hpyfe73ORF7715P |
| 7725 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyK012XVI (92% identity) | Hpyfe73ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | R | HpyTW20XIP (100% identity) | GGATG | Hpyfe73ORF275P |
| 275 | M | M1.Hpyfe70ORF280P (99% identity) | GGATG | M1.Hpyfe73ORF275P |
| 280 | M | M2.Hpyfe70ORF280P (100% identity) | GGATG | M2.Hpyfe73ORF275P |
| 285 | C | C.Hpyfe70ORF280P (100% identity) | C.Hpyfe73ORF275P | |
| 290 | DNA polymerase I | |||
| 560 | restriction endonuclease | |||
| 565 | R | HpyTW03VIIP (52% identity) | GAATTC | Hpyfe73ORF570P |
| 570 | M | M.HpySG04ORF6880P (99% identity) | GAATTC | M.Hpyfe73ORF570P |
| 575 | glycosyltransferase family 8 protein | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | HpyOK34ORFA1P (95% identity) | CATG | Hpyfe73ORF1425P |
| 1425 | M | M.HpyML2ORFYP (99% identity) | CATG | M.Hpyfe73ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.HpyUM085ORF8180P (98% identity) | GCGC | M.Hpyfe73ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | Hpyfe126ORF2135P (100% identity) | TCNNGA | Hpyfe73ORF2065P |
| 2065 | M | M.HpyIS7XI (97% identity) | TCNNGA | M.Hpyfe73ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2725 | ATP-dependent helicase | |||
| 2730 | M | M.HpyMKF10ORF939P (96% identity) | GTNNAC | M.Hpyfe73ORF2730P |
| 2735 | R | HpyTW09IXP (97% identity) | GTNNAC | Hpyfe73ORF2730P |
| 2740 | flagellar hook protein FlgE | |||
| 2930 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2935 | M | M.Hpy4109ORFWP (95% identity) | GTAC | M.Hpyfe73ORF2935P |
| 2940 | R | HpyV002IXP (99% identity) | GTAC | Hpyfe73ORF2935P |
| 2945 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4480 | osmoprotection protein | |||
| 4485 | R | Hpyfe23ORF4645P (100% identity) | CGWCG | Hpyfe73ORF4490P |
| 4490 | M | M.Hpyfe23ORF4645P (100% identity) | CGWCG | M.Hpyfe73ORF4490P |
| 4495 | ABC transporter permease/substrate-binding | |||
| 4805 | catalase | |||
| 4810 | R | HpyT028ORF2480P (98% identity) | ACGT | Hpyfe73ORF4815P |
| 4815 | M | M.HpyMKM6ORF486P (99% identity) | ACGT | M.Hpyfe73ORF4815P |
| 4820 | translational GTPase TypA | |||
| 4825 | lipopolysaccharide heptosyltransferase family | |||
| 4830 | M | M.HpyOK06ORFPP (97% identity) | ATTAAT | M.Hpyfe73ORF4830P |
| 4835 | Hop family outer membrane protein HopJ/HopK | |||
| 5700 | 125 aa hypothetical protein | |||
| 5705 | M | M.HpyTW07VII (100% identity) | CTNAG | M.Hpyfe73ORF5705P |
| 5710 | R | HpyMA18VIIIP (99% identity) | CTNAG | Hpyfe73ORF5705P |
| 5715 | polysaccharide deacetylase | |||
| 5945 | AAA family ATPase | |||
| 5950 | M | M.HpyYN483ORFAP (98% identity) | CCGG | M.Hpyfe73ORF5950P |
| 5955 | R | HpyTW19IIP (99% identity) | CCGG | Hpyfe73ORF5950P |
| 5960 | 204 aa hypothetical protein | |||
| 5960 | 204 aa hypothetical protein | |||
| 5965 | M | M.HpySG09X (100% identity) | TCGA | M.Hpyfe73ORF5965P |
| 5970 | exodeoxyribonuclease VII large subunit | |||
| 6460 | pseudaminic acid synthase | |||
| 6465 | R | R1.Hpyfe110ORF6665P (98% identity) | R1.Hpyfe73ORF6475P | |
| 6470 | R | R2.Hpyfe110ORF6665P (98% identity) | R2.Hpyfe73ORF6475P | |
| 6475 | M | M.HpyJA115ORF880P (97% identity) | M.Hpyfe73ORF6475P | |
| 6480 | elongation factor P | |||
| 6860 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6865 | M | M.HpyM26CORFSP (98% identity) | GATC | M.Hpyfe73ORF6865P |
| 6870 | HTH domain-containing protein | |||
| 7055 | sodium/proline symporter PutP | |||
| 7060 | M | M1.Hpyfe82ORF6930P (98% identity) | M1.Hpyfe73ORF7060P | |
| 7065 | M | M1.HpyDU8AORFJP (99% identity) | CCTC | M2.Hpyfe73ORF7060P |
| 7070 | agmatine deiminase | |||
| 7110 | S41 family peptidase | |||
| 7115 | RM | HpyK034ORF250P (86% identity) | Hpyfe73ORF7115P | |
| 7120 | carboxylating nicotinate-nucleotide | |||
| 7615 | 134 aa hypothetical protein | |||
| 7620 | R | HpyV009XVP (99% identity) | TGCA | Hpyfe73ORF7625P |
| 7625 | M | M.HpyML3ORFHP (99% identity) | TGCA | M.Hpyfe73ORF7625P |
| 7630 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyHP32ORF6995P (97% identity) | M.Hpyfe73ORF40P | |
| 50 | R | Hpyfe33ORF40P (97% identity) | Hpyfe73ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 635 | type III restriction endonuclease subunit R | |||
| 640 | R | HpySG17ORF1010P (95% identity) | Hpyfe73ORF645P | |
| 645 | M | M.HpyQ55ORFRP (97% identity) | M.Hpyfe73ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2975 | type I glutamate--ammonia ligase | |||
| 2980 | R | HpyK041GmrSDP (91% identity) | Hpyfe73GmrSDP | |
| 2985 | 50S ribosomal protein L9 | |||
| 3555 | sel1 repeat family protein | |||
| 3560 | R | Hpyfe103GmrSDP (95% identity) | Hpyfe73GmrSD2P | |
| 3565 | NAD(P)H-dependent oxidoreductase | |||