Helicobacter pylori Hpfe074 |
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Putative Helicobacter pylori Hpfe074 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,602,783 bp
GenBank #: CP094107
REBASE acronym: Hpyfe74
Org_num: 57320
All begin MPG17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3420 | cadmium-translocating P-type ATPase | |||
| 3425 | S | S.HpyG011XIII (89% identity) | S.Hpyfe74ORF3425P | |
| 3430 | outer membrane beta-barrel protein HofF | |||
| 7595 | M48 family metallopeptidase | |||
| 7600 | R | Hpyfe126ORF7605P (97% identity) | CRTANNNNNNNTG | Hpyfe74ORF7605P |
| 7605 | M | M.Hpyfe48ORF7700P (98% identity) | CRTANNNNNNNTG | M.Hpyfe74ORF7605P |
| 7610 | S | S.HpyAR10ORF7275P (98% identity) | CRTANNNNNNNTG | S.Hpyfe74ORF7605P |
| 7615 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyJA112ORF7160P (93% identity) | Hpyfe74ORF60P | |
| 65 | transcription termination factor NusA | |||
| 270 | ComF family protein | |||
| 275 | RM | Hpyfe71ORF275P (98% identity) | CYANNNNNNTTC | Hpyfe74ORF275P |
| 280 | S | S1.Hpyfe85ORF275P (96% identity) | S.Hpyfe74ORF275AP | |
| 285 | S | S.HpyID4ORF7145P (44% identity) | S.Hpyfe74ORF275BP | |
| 290 | DNA polymerase I | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | HpyK111IP (96% identity) | CATG | Hpyfe74ORF1420P |
| 1420 | M | M.HpyT027I (97% identity) | CATG | M.Hpyfe74ORF1420P |
| 1425 | HAD family hydrolase | |||
| 2015 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2020 | M | M.HpyTW22XIII (98% identity) | GCGC | M.Hpyfe74ORF2020P |
| 2025 | 144 aa hypothetical protein | |||
| 2200 | Laminin subunit alpha-2 precursor | |||
| 2205 | R | Hpyfe113ORF930P (99% identity) | TCNNGA | Hpyfe74ORF2210P |
| 2210 | M | M.Hpyfe85ORF2060P (99% identity) | TCNNGA | M.Hpyfe74ORF2210P |
| 2215 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2850 | ATP-dependent helicase | |||
| 2855 | M | M.HpySG14IX (95% identity) | GTNNAC | M.Hpyfe74ORF2855P |
| 2860 | R | Hpyfe35ORF2845P (92% identity) | GTNNAC | Hpyfe74ORF2855P |
| 2865 | flagellar hook protein FlgE | |||
| 3115 | phosphatase PAP2 family protein | |||
| 3120 | R | HpyK009ORF2475P (98% identity) | GGCC | Hpyfe74ORF3125P |
| 3125 | M | M.Hpyfe85ORF2990P (99% identity) | GGCC | M.Hpyfe74ORF3125P |
| 3130 | type I restriction-modification system subunit M | |||
| 4005 | outer membrane protein | |||
| 4010 | RM | HpyK115ORF3400P (90% identity) | Hpyfe74ORF4010P | |
| 4015 | (Fe-S)-binding protein | |||
| 4815 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4820 | R | HpyISR6IXP (88% identity) | GTAC | Hpyfe74ORF4825P |
| 4825 | M | M.HpyV006X (98% identity) | GTAC | M.Hpyfe74ORF4825P |
| 4830 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4910 | catalase | |||
| 4915 | R | Hpy23ORF765P (98% identity) | ACGT | Hpyfe74ORF4920P |
| 4920 | M | M.HpyK116ORF2615P (99% identity) | ACGT | M.Hpyfe74ORF4920P |
| 4925 | GIY-YIG nuclease family protein | |||
| 4920 | DNA cytosine methyltransferase | |||
| 4925 | R | Hpyfe126ORF4880P (99% identity) | ACNGT | Hpyfe74ORF4930P |
| 4930 | M | M.HpySG09ORF2420P (98% identity) | ACNGT | M.Hpyfe74ORF4930P |
| 4935 | translational GTPase TypA | |||
| 4940 | lipopolysaccharide heptosyltransferase family | |||
| 4945 | M | M.Hpyfe122ORF4805P (98% identity) | ATTAAT | M.Hpyfe74ORF4945P |
| 4950 | Hop family outer membrane protein HopJ/HopK | |||
| 5445 | group I intron-associated PD-(D/E)XK | |||
| 5450 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpyfe74ORF5450P |
| 5455 | translation elongation factor 4 | |||
| 5885 | AAA family ATPase | |||
| 5890 | M | M.HpySG04IV (99% identity) | CCGG | M.Hpyfe74ORF5890P |
| 5895 | R | HpyCA16IIIP (90% identity) | CCGG | Hpyfe74ORF5890P |
| 5900 | exodeoxyribonuclease VII large subunit | |||
| 6310 | pseudaminic acid synthase | |||
| 6315 | R | R2.Hpyfe64ORF1930P (95% identity) | R2.Hpyfe74ORF6325P | |
| 6320 | R | Hpy238McrBP (97% identity) | R1.Hpyfe74ORF6325P | |
| 6325 | M | M2.HpyV007ORF1005P (36% identity) | M.Hpyfe74ORF6325P | |
| 6330 | elongation factor P | |||
| 6715 | alpha-1,2-fucosyltransferase | |||
| 6720 | M | M.Hpybs3ORFGP (97% identity) | GATC | M.Hpyfe74ORF6720P |
| 6725 | R | HpyTW02IXP (96% identity) | GATC | Hpyfe74ORF6720P |
| 6735 | ACP S-malonyltransferase | |||
| 6900 | DNA cytosine methyltransferase | |||
| 6905 | R | HpyTW24IXP (95% identity) | CCTC | Hpyfe74ORF6910P |
| 6910 | M | M1.Hpyfe12ORF7025P (97% identity) | CCTC | M1.Hpyfe74ORF6910P |
| 6915 | M | M1.HpyOK304ORFQP (99% identity) | CCTC | M2.Hpyfe74ORF6910P |
| 6920 | agmatine deiminase | |||
| 6965 | DNA methyltransferase | |||
| 6970 | R | Hpybs1ORFNP (96% identity) | GANTC | Hpyfe74ORF6975P |
| 6975 | M | M.HpySG24VI (99% identity) | GANTC | M.Hpyfe74ORF6975P |
| 6980 | 382 aa hypothetical protein | |||
| 6975 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpySW02ORF6800P (84% identity) | Hpyfe74ORF6980P | |
| 6990 | carboxylating nicotinate-nucleotide | |||
| 7495 | 186 aa hypothetical protein | |||
| 7500 | R | HpyV007XIP (98% identity) | TGCA | Hpyfe74ORF7505P |
| 7505 | M | M.HpyTW09X (100% identity) | TGCA | M.Hpyfe74ORF7505P |
| 7510 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe92ORF40P (96% identity) | M.Hpyfe74ORF40P | |
| 50 | R | Hpyfe22ORF40P (97% identity) | Hpyfe74ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 630 | biotin synthase | |||
| 635 | R | Hpyfe122ORF630P (96% identity) | Hpyfe74ORF640P | |
| 640 | M | M.Hpyfe77ORF610P (96% identity) | M.Hpyfe74ORF640P | |
| 645 | ABC transporter ATP-binding protein/permease | |||
| 7040 | copper response regulator transcription factor | |||
| ??? | M | M.HpyOK88ORFNP (97% identity) | M.Hpyfe74ORF7045P | |
| 7050 | R | HpyOK88ORFNP (95% identity) | Hpyfe74ORF7045P | |
| 7055 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4190 | NAD(P)H-dependent oxidoreductase | |||
| 4195 | R | Hpy52NGmrSD2P (96% identity) | Hpyfe74GmrSDP | |
| 4200 | sel1 repeat family protein | |||
| 4775 | 50S ribosomal protein L9 | |||
| 4780 | R | HpyAR10GmrSDP (76% identity) | Hpyfe74GmrSD2P | |
| 4785 | type I glutamate--ammonia ligase | |||