Helicobacter pylori Hpfe075 |
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Putative Helicobacter pylori Hpfe075 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,652,404 bp
GenBank #: CP094106
REBASE acronym: Hpyfe75
Org_num: 57321
All begin MPF92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3060 | phosphatase PAP2 family protein | |||
| 3065 | M | M.HpyK112IV (95% identity) | CYANNNNNNTCC | M.Hpyfe75ORF3065P |
| 3070 | S | S.HpyLI04XII (93% identity) | CYANNNNNNTCC | S.Hpyfe75ORF3065P |
| 3075 | R | Hpyfe99ORF4915P (97% identity) | CYANNNNNNTCC | Hpyfe75ORF3065P |
| 3080 | hydroxyethylthiazole kinase | |||
| 4950 | motility associated factor glycosyltransferase | |||
| 4955 | R | HpyT027VIP (94% identity) | CCANNNNNNTAA | Hpyfe75ORF4960P |
| 4960 | M | M.Hpy04ORFSP (97% identity) | CCANNNNNNTAA | M.Hpyfe75ORF4960P |
| 4965 | S | S.HpyOK30ORFRP (99% identity) | CCANNNNNNTAA | S.Hpyfe75ORF4960P |
| 4975 | RNA degradosome polyphosphate kinase | |||
| 7830 | M48 family metallopeptidase | |||
| 7835 | R | Hpyfe15ORF7430P (97% identity) | CRTANNNNNNNTC | Hpyfe75ORF7840P |
| 7840 | M | M.Hpyfe5ORF7635P (97% identity) | CRTANNNNNNNTC | M.Hpyfe75ORF7840P |
| 7845 | S | S.HpyF232ORFGP (98% identity) | CRTANNNNNNNTC | S.Hpyfe75ORF7840P |
| 7850 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 130 | 717 aa hypothetical protein | |||
| 135 | RM | HpyK116ORF7480P (91% identity) | Hpyfe75ORF135P | |
| 140 | transcription termination factor NusA | |||
| 205 | outer membrane protein | |||
| 210 | R | HpyPU007IVP (98% identity) | CCATC | Hpyfe75ORF215P |
| 215 | M | M1.Hpyfe12ORF140P (100% identity) | CCATC | M1.Hpyfe75ORF215P |
| 220 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpyfe75ORF215P |
| 225 | LptF/LptG family permease | |||
| 350 | ComF family protein | |||
| 355 | RM | HpyOK314ORFGP (99% identity) | CYANNNNNNTTC | Hpyfe75ORF355P |
| 360 | S | S.HpyL024ORF7115P (66% identity) | S.Hpyfe75ORF355P | |
| 365 | DNA polymerase I | |||
| 1480 | IceA2 protein | |||
| 1485 | M | M.HpyK005I (98% identity) | CATG | M.Hpyfe75ORF1485P |
| 1490 | HAD family hydrolase | |||
| 1930 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1935 | M | M.HpyJ015XII (96% identity) | GCGC | M.Hpyfe75ORF1935P |
| 1940 | R | Hpyfe12ORF1850P (100% identity) | GCGC | Hpyfe75ORF1935P |
| 1945 | IS607 family transposase | |||
| 2140 | Laminin subunit alpha-2 precursor | |||
| 2145 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe75ORF2150P |
| 2150 | M | M.Hpyfe120ORF2030P (99% identity) | TCNNGA | M.Hpyfe75ORF2150P |
| 2155 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2795 | ATP-dependent helicase | |||
| 2800 | M | M.HpyCA7VI (98% identity) | GTNNAC | M.Hpyfe75ORF2800P |
| 2805 | R | HpyOK304ORFXP (95% identity) | GTNNAC | Hpyfe75ORF2800P |
| 2810 | flagellar hook protein FlgE | |||
| 3885 | (Fe-S)-binding protein | |||
| 3890 | RM | HpyJ017ORF3560P (91% identity) | Hpyfe75ORF3890P | |
| 3895 | 450 aa hypothetical protein | |||
| 4845 | catalase | |||
| 4850 | R | Hpyfe32ORF4920P (99% identity) | ACGT | Hpyfe75ORF4855P |
| 4855 | M | M.Hpyfe52ORF4760P (98% identity) | ACGT | M.Hpyfe75ORF4855P |
| 4860 | GIY-YIG nuclease family protein | |||
| 4855 | DNA cytosine methyltransferase | |||
| 4860 | R | Hpy898ORF2600P (99% identity) | ACNGT | Hpyfe75ORF4865P |
| 4865 | M | M.HpyK110X (99% identity) | ACNGT | M.Hpyfe75ORF4865P |
| 4870 | translational GTPase TypA | |||
| 4875 | lipopolysaccharide heptosyltransferase family | |||
| 4880 | M | M.HpyMA18V (98% identity) | ATTAAT | M.Hpyfe75ORF4880P |
| 4885 | Hop family outer membrane protein HopJ/HopK | |||
| 5830 | AAA family ATPase | |||
| 5835 | M | M.Hpy3sORF2060P (100% identity) | CCGG | M.Hpyfe75ORF5835P |
| 5840 | R | HpyMKF10ORF328P (97% identity) | CCGG | Hpyfe75ORF5835P |
| 5845 | exodeoxyribonuclease VII large subunit | |||
| 6720 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6725 | M | M.Hpyfe63ORF6480P (98% identity) | GATC | M.Hpyfe75ORF6725P |
| 6730 | R | HpyF93ORFLP (90% identity) | GATC | Hpyfe75ORF6725P |
| 6740 | ACP S-malonyltransferase | |||
| 7115 | sodium/proline symporter PutP | |||
| 7120 | M | M2.HpyHP32IVP (99% identity) | M1.Hpyfe75ORF7120P | |
| 7125 | M | M1.HpyK049VI (98% identity) | CCTC | M2.Hpyfe75ORF7120P |
| 7130 | TerC family protein | |||
| 7170 | DNA methyltransferase | |||
| 7175 | R | Hpyfe12ORF7090P (100% identity) | GANTC | Hpyfe75ORF7180P |
| 7180 | M | M.Hpyfe12ORF7090P (100% identity) | GANTC | M.Hpyfe75ORF7180P |
| 7185 | 379 aa hypothetical protein | |||
| 7185 | 379 aa hypothetical protein | |||
| 7190 | RM | HpySWT13ORF6305P (62% identity) | Hpyfe75ORF7190P | |
| 7195 | carboxylating nicotinate-nucleotide | |||
| 7245 | copper response regulator transcription factor | |||
| 7250 | R | HpyKH44ORFUP (94% identity) | GAAGA | Hpyfe75ORF7255P |
| 7255 | M | M1.Hpyfe35ORF6990P (98% identity) | GAAGA | M1.Hpyfe75ORF7255P |
| 7260 | M | M1.HpyT027VIII (99% identity) | GAAGA | M2.Hpyfe75ORF7255P |
| 7265 | EcoRV family type II restriction endonuclease | |||
| 7265 | EcoRV family type II restriction endonuclease | |||
| 7270 | M | M.Hpybs3ORFWP (97% identity) | GATATC | M.Hpyfe75ORF7270P |
| 7275 | site-specific DNA-methyltransferase | |||
| 7740 | 193 aa hypothetical protein | |||
| 7745 | R | Hpy173ORF2660P (92% identity) | TGCA | Hpyfe75ORF7750P |
| 7750 | M | M.Hpyfe12ORF7635P (99% identity) | TGCA | M.Hpyfe75ORF7750P |
| 7755 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 115 | 125 aa hypothetical protein | |||
| ??? | M | M.Hpyfe60ORF40P (53% identity) | M.Hpyfe75ORFAP | |
| 125 | R | Hpyfe122ORF40P (96% identity) | Hpyfe75ORFAP | |
| 130 | 717 aa hypothetical protein | |||
| 700 | biotin synthase | |||
| 705 | R | HpyUM077ORF6630P (93% identity) | Hpyfe75ORF710P | |
| 710 | M | M.Hpyfe13ORF805P (97% identity) | M.Hpyfe75ORF710P | |
| 715 | DNA/RNA non-specific endonuclease | |||
| 7270 | Dam family site-specific | |||
| ??? | M | M.HpyJA109ORF200P (96% identity) | M.Hpyfe75ORF7275P | |
| 7280 | R | HpyK035ORF195P (96% identity) | Hpyfe75ORF7275P | |
| 7285 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4125 | NAD(P)H-dependent oxidoreductase | |||
| 4130 | R | Hpyfe70GmrSDP (96% identity) | Hpyfe75GmrSDP | |
| 4135 | sel1 repeat family protein | |||
| 4700 | 50S ribosomal protein L9 | |||
| 4705 | R | HpySW26GmrSDP (91% identity) | Hpyfe75GmrSD2P | |
| 4710 | type I glutamate--ammonia ligase | |||