Helicobacter pylori Hpfe076 |
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Putative Helicobacter pylori Hpfe076 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,573,039 bp
GenBank #: CP094105
REBASE acronym: Hpyfe76
Org_num: 57322
All begin MPG65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3420 | cadmium-translocating P-type ATPase | |||
| 3425 | S | S.HpyH137ORF4720P (96% identity) | CCANNNNNNNNTTC | S.Hpyfe76ORF3425P |
| 3430 | 48 aa hypothetical protein | |||
| 4870 | type I restriction endonuclease | |||
| 4875 | R | HpyUM038ORF2100P (69% identity) | Hpyfe76ORF4880P | |
| 4880 | M | M.Hpyfe99ORF5195P (97% identity) | M.Hpyfe76ORF4880P | |
| 4885 | S | S.HpyTW22ORF2200P (25% identity) | S1.Hpyfe76ORF4880P | |
| 4890 | S | S.Hpyfe10ORF5040P (80% identity) | S2.Hpyfe76ORF4880P | |
| 4900 | RNA degradosome polyphosphate kinase | |||
| 7435 | M48 family metallopeptidase | |||
| 7440 | R | Hpy28ORF1462P (97% identity) | CRTANNNNNNRTAA | Hpyfe76ORF7445P |
| 7445 | M | M.Hpy39ORFOP (97% identity) | CRTANNNNNNRTAA | M.Hpyfe76ORF7445P |
| 7450 | CAAX protease | |||
| 7455 | S | S.HpyP77ORFNP (97% identity) | CRTANNNNNNRTAA | S.Hpyfe76ORF7445P |
| 7460 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 718 aa hypothetical protein | |||
| 60 | RM | Hpyfe113ORF2935P (93% identity) | Hpyfe76ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpy55ORF1469P (98% identity) | CCATC | Hpyfe76ORF140P |
| 140 | M | M1.Hpyfe93ORF140P (100% identity) | CCATC | M1.Hpyfe76ORF140P |
| 145 | M | M1.HpyK002ORF7135P (100% identity) | CCATC | M2.Hpyfe76ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpyfe38ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe76ORF280P |
| 285 | S | S.HpyPU003ORF7220P (96% identity) | CYANNNNNNNTGA | S.Hpyfe76ORF280P |
| 290 | DNA polymerase I | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | Hpyfe8ORF5510P (99% identity) | CATG | Hpyfe76ORF1420P |
| 1420 | M | M.Hpy192ORFNP (98% identity) | CATG | M.Hpyfe76ORF1420P |
| 1425 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyID5X (96% identity) | M.Hpyfe76ORF1875P | |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe76ORF2060P |
| 2060 | M | M.HpyMA06XI (99% identity) | TCNNGA | M.Hpyfe76ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2855 | ATP-dependent helicase | |||
| 2860 | M | M.Hpy274ORF1066P (97% identity) | GTNNAC | M.Hpyfe76ORF2860P |
| 2865 | R | Hpyfe101ORF2705P (96% identity) | GTNNAC | Hpyfe76ORF2860P |
| 2870 | flagellar hook protein FlgE | |||
| 3950 | (Fe-S)-binding protein | |||
| 3955 | RM | HpyJP26ORFBP (92% identity) | Hpyfe76ORF3955P | |
| 3960 | outer membrane protein | |||
| 4675 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4680 | R | HpyGU62AORFRP (99% identity) | GTAC | Hpyfe76ORF4685P |
| 4685 | M | M.Hpyfe101ORF2910P (99% identity) | GTAC | M.Hpyfe76ORF4685P |
| 4690 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4770 | catalase | |||
| 4775 | R | HpyJ026ORF2375P (98% identity) | ACNGT | Hpyfe76ORF4780P |
| 4780 | M | M.Hpyfe56ORF5130P (100% identity) | ACNGT | M.Hpyfe76ORF4780P |
| 4785 | translational GTPase TypA | |||
| 4790 | lipopolysaccharide heptosyltransferase family | |||
| 4795 | M | M.HpyJ029IX (98% identity) | ATTAAT | M.Hpyfe76ORF4795P |
| 4800 | Hop family outer membrane protein HopJ/HopK | |||
| 5750 | AAA family ATPase | |||
| 5755 | M | M.HpySG32III (99% identity) | CCGG | M.Hpyfe76ORF5755P |
| 5760 | R | HpyF209ORF300P (94% identity) | CCGG | Hpyfe76ORF5755P |
| 5765 | 204 aa hypothetical protein | |||
| 5765 | 204 aa hypothetical protein | |||
| 5770 | M | M.HpyJA103VII (99% identity) | TCGA | M.Hpyfe76ORF5770P |
| 5775 | exodeoxyribonuclease VII large subunit | |||
| 6570 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6575 | M | M.HpyOK306ORFRP (98% identity) | GATC | M.Hpyfe76ORF6575P |
| 6580 | R | HpyT030IXP (96% identity) | GATC | Hpyfe76ORF6575P |
| 6590 | ACP S-malonyltransferase | |||
| 6755 | DNA cytosine methyltransferase | |||
| ??? | R | HpyFD568ORFFP (94% identity) | CCTC | Hpyfe76ORF6770P |
| 6770 | M | M1.Hpyfe107ORF7040P (99% identity) | CCTC | M1.Hpyfe76ORF6770P |
| 6775 | M | M2.Hpyfe2ORF6990P (98% identity) | CCTC | M2.Hpyfe76ORF6770P |
| 6780 | agmatine deiminase | |||
| 6830 | 287 aa hypothetical protein | |||
| 6835 | RM | HpySH010ORF6650P (66% identity) | Hpyfe76ORF6835P | |
| 6840 | carboxylating nicotinate-nucleotide | |||
| 7345 | 53 aa hypothetical protein | |||
| 7350 | R | HpyMA08IIP (98% identity) | TGCA | Hpyfe76ORF7355P |
| 7355 | M | M.Hpyfe65ORF7375P (99% identity) | TGCA | M.Hpyfe76ORF7355P |
| 7360 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe51ORF40P (97% identity) | M.Hpyfe76ORF40P | |
| 50 | R | HpyTW02ORF6990P (97% identity) | Hpyfe76ORF40P | |
| 55 | 718 aa hypothetical protein | |||
| 630 | type III restriction endonuclease subunit R | |||
| 635 | R | HpyID10ORF6605P (96% identity) | Hpyfe76ORF640P | |
| 640 | M | M.Hpyfe54ORF655P (97% identity) | M.Hpyfe76ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| 6890 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyfe125ORF6840P (97% identity) | M.Hpyfe76ORF6895P | |
| 6900 | R | Hpybs1ORFLP (97% identity) | Hpyfe76ORF6895P | |
| 6905 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4175 | NAD(P)H-dependent oxidoreductase | |||
| 4180 | R | HpySG24GmrSD2P (96% identity) | Hpyfe76GmrSDP | |
| 4185 | sel1 repeat family protein | |||
| 4635 | 50S ribosomal protein L9 | |||
| 4640 | R | HpySP18GmrSDP (81% identity) | Hpyfe76GmrSD2P | |
| 4645 | type I glutamate--ammonia ligase | |||