Helicobacter pylori Hpfe077 |
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Putative Helicobacter pylori Hpfe077 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,624,315 bp
GenBank #: CP094103
REBASE acronym: Hpyfe77
Org_num: 57323
All begin MPG29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2725 | RNA degradosome polyphosphate kinase | |||
| 2735 | S | S.HpyU201ORF2120P (99% identity) | CAGNNNNNTTA | S.Hpyfe77ORF2740P |
| 2740 | M | M.HpyK013ORF2380P (96% identity) | CAGNNNNNTTA | M.Hpyfe77ORF2740P |
| 2745 | R | Hpyfe125ORF2620P (95% identity) | CAGNNNNNTTA | Hpyfe77ORF2740P |
| 2750 | type I restriction endonuclease | |||
| 4540 | outer membrane beta-barrel protein HofF | |||
| 4545 | S | S.HpyJA102II (95% identity) | AACNNNNNNTTC | S.Hpyfe77ORF4545P |
| 4550 | cadmium-translocating P-type ATPase | |||
| 4830 | hydroxyethylthiazole kinase | |||
| 4835 | R | Hpyfe103ORF4610P (97% identity) | Hpyfe77ORF4845P | |
| 4840 | S | S.HpyG272ORF4800P (97% identity) | S.Hpyfe77ORF4845P | |
| 4845 | M | M.HpyMA05ORF4250P (97% identity) | M.Hpyfe77ORF4845P | |
| 4850 | phosphatase PAP2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyOK314ORFIP (90% identity) | Hpyfe77ORF50P | |
| 55 | transcription termination factor NusA | |||
| 255 | ComF family protein | |||
| 260 | RM | HpyIS2ORF6885P (98% identity) | CYANNNNNNTTC | Hpyfe77ORF260P |
| 265 | S | S.HpyLIM9ORF7260P (70% identity) | S.Hpyfe77ORF260P | |
| 270 | DNA polymerase I | |||
| 535 | UDP-N-acetylmuramate dehydrogenase | |||
| 540 | R | HpyTW03VIIP (99% identity) | GAATTC | Hpyfe77ORF545P |
| 545 | M | M.Hpyfe126ORF585P (100% identity) | GAATTC | M.Hpyfe77ORF545P |
| 550 | glycosyltransferase family 8 protein | |||
| 740 | agmatine/peptidylarginine deiminase | |||
| 745 | M | M2.Hpyfe29ORF6800P (98% identity) | CCTC | M1.Hpyfe77ORF745P |
| 750 | M | M1.Hpyfe126ORF6925P (98% identity) | M2.Hpyfe77ORF745P | |
| 755 | sodium/proline symporter PutP | |||
| 1165 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1170 | M | M.HpyP89ORFEP (99% identity) | GATC | M.Hpyfe77ORF1170P |
| 1175 | R | HpyJ028VIP (96% identity) | GATC | Hpyfe77ORF1170P |
| 1185 | ACP S-malonyltransferase | |||
| 1430 | elongation factor P | |||
| 1435 | M | M2.HpyTW21ORF915P (33% identity) | M.Hpyfe77ORF1435P | |
| 1440 | R | R1.HpyK028ORF930P (90% identity) | R1.Hpyfe77ORF1435P | |
| 1445 | R | Hpy52ORF187P (97% identity) | R2.Hpyfe77ORF1435P | |
| 1450 | pseudaminic acid synthase | |||
| 1850 | exodeoxyribonuclease VII large subunit | |||
| 1855 | M | M.Hpyfe28ORF5725P (100% identity) | TCGA | M.Hpyfe77ORF1855P |
| 1860 | 204 aa hypothetical protein | |||
| 1860 | 204 aa hypothetical protein | |||
| 1865 | R | HpyML3ORFOP (90% identity) | CCGG | Hpyfe77ORF1870P |
| 1870 | M | M.HpyUM077ORF765P (99% identity) | CCGG | M.Hpyfe77ORF1870P |
| 1875 | AAA family ATPase | |||
| 2295 | translation elongation factor 4 | |||
| 2300 | M | M.HpyPU006ORF1745P (99% identity) | GCNGC | M.Hpyfe77ORF2300P |
| 2305 | group I intron-associated PD-(D/E)XK | |||
| 2820 | Hop family outer membrane protein HopJ/HopK | |||
| 2825 | M | M.HpyTW18IV (98% identity) | ATTAAT | M.Hpyfe77ORF2825P |
| 2830 | lipopolysaccharide heptosyltransferase family | |||
| 2835 | translational GTPase TypA | |||
| 2840 | M | M.Hpyfe106ORF4905P (99% identity) | ACGT | M.Hpyfe77ORF2840P |
| 2845 | R | Hpy4109ORFJP (99% identity) | ACGT | Hpyfe77ORF2840P |
| 2850 | catalase | |||
| 3955 | (Fe-S)-binding protein | |||
| 3960 | RM | HpyTW10ORF3335P (92% identity) | Hpyfe77ORF3960P | |
| 3965 | outer membrane protein | |||
| 4045 | 3-5 exonuclease | |||
| 4050 | M | M.Hpyfe112ORF3910P (99% identity) | CCNNGG | M.Hpyfe77ORF4050P |
| 4055 | R | HpyMA18IVP (99% identity) | CCNNGG | Hpyfe77ORF4050P |
| 4060 | 3-5 exonuclease | |||
| 5100 | flagellar hook protein FlgE | |||
| 5105 | R | Hpyfe126ORF2795P (96% identity) | GTNNAC | Hpyfe77ORF5110P |
| 5110 | M | M.HpyK006VIII (97% identity) | GTNNAC | M.Hpyfe77ORF5110P |
| 5115 | ATP-dependent helicase | |||
| 5765 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5770 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe77ORF5770P |
| 5775 | R | Hpyfe113ORF930P (98% identity) | TCNNGA | Hpyfe77ORF5770P |
| 5780 | Laminin subunit alpha-2 precursor | |||
| 5960 | 144 aa hypothetical protein | |||
| 5965 | M | M.HpyUM085ORF8180P (97% identity) | GCGC | M.Hpyfe77ORF5965P |
| 5970 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6420 | HAD family hydrolase | |||
| 6425 | M | M.HpyMA23I (98% identity) | CATG | M.Hpyfe77ORF6425P |
| 6430 | R | Hpyfe81ORF6155P (95% identity) | CATG | R1.Hpyfe77ORF6425P |
| 6435 | 38 aa hypothetical protein | |||
| 6440 | R | R1.HpyTN2ORF1370P (83% identity) | CATG | R2.Hpyfe77ORF6425P |
| 6445 | serine O-acetyltransferase | |||
| 7145 | DNA methyltransferase | |||
| 7150 | R | HpyK025VIIP (98% identity) | GANTC | Hpyfe77ORF7155P |
| 7155 | M | M.HpyOK212ORFJP (100% identity) | GANTC | M.Hpyfe77ORF7155P |
| 7160 | 426 aa hypothetical protein | |||
| 7155 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpyfe48ORF7055P (85% identity) | Hpyfe77ORF7160P | |
| 7170 | carboxylating nicotinate-nucleotide | |||
| 7690 | 103 aa hypothetical protein | |||
| 7695 | R | Hpyfe97ORF7685P (99% identity) | TGCA | Hpyfe77ORF7700P |
| 7700 | M | M.Hpyfe78ORF7595P (98% identity) | TGCA | M.Hpyfe77ORF7700P |
| 7705 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyJ019ORF7220P (98% identity) | M.Hpyfe77ORF40P | |
| 45 | R | HpyK047ORF7050P (97% identity) | Hpyfe77ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 600 | biotin synthase | |||
| 605 | R | HpyOK302ORFCP (91% identity) | Hpyfe77ORF610P | |
| 610 | M | M.HpySG33ORF6775P (96% identity) | M.Hpyfe77ORF610P | |
| 615 | ABC transporter ATP-binding protein/permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | type I glutamate--ammonia ligase | |||
| 2985 | R | HpyJ029GmrSDP (90% identity) | Hpyfe77GmrSD2P | |
| 2990 | 50S ribosomal protein L9 | |||
| 3760 | sel1 repeat family protein | |||
| 3765 | R | HpyJA107GmrSD2P (90% identity) | Hpyfe77GmrSDP | |
| 3770 | NAD(P)H-dependent oxidoreductase | |||