Helicobacter pylori Hpfe078 |
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Putative Helicobacter pylori Hpfe078 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,609,466 bp
GenBank #: CP094102
REBASE acronym: Hpyfe78
Org_num: 57324
All begin MPG14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2085 | RNA degradosome polyphosphate kinase | |||
| 2095 | S | S.HpyAL04ORFHP (97% identity) | GCANNNNNNTAA | S.Hpyfe78ORF2100P |
| 2100 | M | M.HpyK022IX (97% identity) | GCANNNNNNTAA | M.Hpyfe78ORF2100P |
| 2105 | R | HpyFD568ORFIP (83% identity) | GCANNNNNNTAA | Hpyfe78ORF2100P |
| 2110 | type I restriction endonuclease | |||
| 4030 | hydroxyethylthiazole kinase | |||
| 4035 | R | HpyOK304ORFVP (97% identity) | Hpyfe78ORF4045P | |
| 4040 | S | S.Hpy24ORF519P (93% identity) | S.Hpyfe78ORF4045P | |
| 4045 | M | M.Hpyfe56ORF3060P (96% identity) | M.Hpyfe78ORF4045P | |
| 4050 | phosphatase PAP2 family protein | |||
| 7690 | M48 family metallopeptidase | |||
| 7695 | R | HpyMA08VP (97% identity) | CRTANNNNNNNTC | Hpyfe78ORF7700P |
| 7700 | M | M.HpyUM077ORF3120P (97% identity) | CRTANNNNNNNTC | M.Hpyfe78ORF7700P |
| 7705 | S | S.HpySG24V (98% identity) | CRTANNNNNNNTC | S.Hpyfe78ORF7700P |
| 7710 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe76ORF60P (93% identity) | Hpyfe78ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe78ORF140P |
| 140 | M | M2.HpyV004III (93% identity) | CCATC | M1.Hpyfe78ORF140P |
| 145 | M | M2.Hpyfe92ORF150P (99% identity) | CCATC | M2.Hpyfe78ORF140P |
| 150 | LptF/LptG family permease | |||
| 280 | VRR-NUC domain-containing protein | |||
| 285 | R | Hpyfe61ORF300P (99% identity) | Hpyfe78ORF290P | |
| 290 | M | M.Hpyfe61ORF300P (99% identity) | M.Hpyfe78ORF290P | |
| 295 | S | S.HpyK027ORF6855P (88% identity) | S.Hpyfe78ORF290P | |
| 300 | DNA polymerase I | |||
| 555 | UDP-N-acetylmuramate dehydrogenase | |||
| 560 | R | HpyK035VIIIP (98% identity) | GAATTC | Hpyfe78ORF565P |
| 565 | M | M.Hpyfe77ORF545P (99% identity) | GAATTC | M.Hpyfe78ORF565P |
| 570 | glycosyltransferase family 8 protein | |||
| 765 | IS1595 family transposase | |||
| ??? | M | M1.HpyV001ORF945P (97% identity) | M1.Hpyfe78ORF770P | |
| 780 | M | M2.HpyK115ORF920P (91% identity) | M2.Hpyfe78ORF770P | |
| 785 | R | R1.HpyF209ORF215P (99% identity) | R1.Hpyfe78ORF770P | |
| 790 | R | R1.Hpyfe17ORF6170P (97% identity) | R2.Hpyfe78ORF770P | |
| 795 | pseudaminic acid synthase | |||
| 1205 | exodeoxyribonuclease VII large subunit | |||
| 1210 | M | M.HpySP414VII (96% identity) | TCGA | M.Hpyfe78ORF1210P |
| 1215 | 204 aa hypothetical protein | |||
| 1215 | 204 aa hypothetical protein | |||
| 1220 | R | HpyJP26XIP (91% identity) | CCGG | Hpyfe78ORF1225P |
| 1225 | M | M.Hpyfe93ORF5875P (99% identity) | CCGG | M.Hpyfe78ORF1225P |
| 1230 | AAA family ATPase | |||
| 1460 | polysaccharide deacetylase | |||
| 1465 | R | HpyV005VIP (98% identity) | CTNAG | Hpyfe78ORF1470P |
| 1470 | M | M.HpyP98ORFLP (99% identity) | CTNAG | M.Hpyfe78ORF1470P |
| 1475 | 125 aa hypothetical protein | |||
| 2180 | Hop family outer membrane protein HopJ/HopK | |||
| 2185 | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpyfe78ORF2185P |
| 2190 | lipopolysaccharide heptosyltransferase family | |||
| 2195 | translational GTPase TypA | |||
| 2200 | M | M.Hpyfe118ORF4995P (99% identity) | ACNGT | M.Hpyfe78ORF2200P |
| 2205 | R | Hpyfe32ORF4930P (99% identity) | ACNGT | Hpyfe78ORF2200P |
| 2210 | DNA cytosine methyltransferase | |||
| 2325 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2330 | M | M.HpyK109VIII (98% identity) | GTAC | M.Hpyfe78ORF2330P |
| 2335 | R | HpyK041IXP (98% identity) | GTAC | Hpyfe78ORF2330P |
| 2340 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3140 | (Fe-S)-binding protein | |||
| 3145 | RM | Hpyfe79ORF3820P (90% identity) | Hpyfe78ORF3145P | |
| 3150 | outer membrane protein | |||
| 3875 | osmoprotection protein | |||
| 3880 | R | Hpyfe33ORF4460P (100% identity) | CGWCG | Hpyfe78ORF3885P |
| 3885 | M | M.Hpyfe8ORF2470P (100% identity) | CGWCG | M.Hpyfe78ORF3885P |
| 3890 | ABC transporter permease/substrate-binding | |||
| 4300 | flagellar hook protein FlgE | |||
| 4305 | R | Hpyfe126ORF2795P (92% identity) | GTNNAC | Hpyfe78ORF4310P |
| 4310 | M | M.Hpyfe125ORF4785P (98% identity) | GTNNAC | M.Hpyfe78ORF4310P |
| 4315 | ATP-dependent helicase | |||
| 4960 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4965 | M | M.HpyK002IX (100% identity) | TCNNGA | M.Hpyfe78ORF4965P |
| 4970 | R | HpyQ59ORFOP (98% identity) | TCNNGA | Hpyfe78ORF4965P |
| 4975 | Laminin subunit alpha-2 precursor | |||
| 5145 | 144 aa hypothetical protein | |||
| 5150 | M | M.HpySG07XII (99% identity) | GCGC | M.Hpyfe78ORF5150P |
| 5155 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5590 | HAD family hydrolase | |||
| 5595 | M | M.Hpyfe39ORF1430P (99% identity) | CATG | M.Hpyfe78ORF5595P |
| 5600 | R | Hpyfe39ORF1430P (96% identity) | CATG | Hpyfe78ORF5595P |
| 5605 | serine O-acetyltransferase | |||
| 6780 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6785 | M | M.Hpyfe122ORF6615P (97% identity) | GATC | M.Hpyfe78ORF6785P |
| 6790 | R | Hpyfe103ORF6765P (96% identity) | GATC | Hpyfe78ORF6785P |
| 6800 | ACP S-malonyltransferase | |||
| 6980 | DNA cytosine methyltransferase | |||
| 6985 | R | HpySG36VP (96% identity) | CCTC | Hpyfe78ORF6990P |
| 6990 | M | M2.HpySG36VP (99% identity) | CCTC | M1.Hpyfe78ORF6990P |
| 6995 | M | M1.HpyOK30ORFNP (99% identity) | CCTC | M2.Hpyfe78ORF6990P |
| 7000 | TerC family protein | |||
| 7040 | DNA methyltransferase | |||
| 7045 | R | Hpyfe103ORF7005P (99% identity) | GANTC | Hpyfe78ORF7050P |
| 7050 | M | M.HpyK005VI (99% identity) | GANTC | M.Hpyfe78ORF7050P |
| 7055 | DNA methyltransferase | |||
| 7055 | DNA methyltransferase | |||
| 7060 | RM | Hpyfe124ORF6830P (94% identity) | Hpyfe78ORF7060P | |
| 7065 | carboxylating nicotinate-nucleotide | |||
| 7115 | copper response regulator transcription factor | |||
| 7120 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpyfe78ORF7125P |
| 7125 | M | M2.HpyC208VI (100% identity) | GAAGA | M1.Hpyfe78ORF7125P |
| 7130 | M | M2.Hpyfe51ORF7145P (100% identity) | GAAGA | M2.Hpyfe78ORF7125P |
| 7135 | site-specific DNA-methyltransferase | |||
| 7585 | 118 aa hypothetical protein | |||
| 7590 | R | HpyK048VIIP (97% identity) | TGCA | Hpyfe78ORF7595P |
| 7595 | M | M.HpyTW04IV (99% identity) | TGCA | M.Hpyfe78ORF7595P |
| 7600 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe125ORF40P (97% identity) | M.Hpyfe78ORF40P | |
| 50 | R | Hpyfe72ORF40P (97% identity) | Hpyfe78ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 6360 | DNA/RNA non-specific endonuclease | |||
| 6365 | M | M.HpyTW21ORF6485P (96% identity) | M.Hpyfe78ORF6365P | |
| 6370 | R | Hpyfe74ORF640P (95% identity) | Hpyfe78ORF6365P | |
| 6375 | biotin synthase | |||
| 7130 | site-specific DNA-methyltransferase | |||
| 7135 | M | M.HpyGU83AORFIP (97% identity) | M.Hpyfe78ORF7135P | |
| 7140 | R | Hpybs1ORFLP (96% identity) | Hpyfe78ORF7135P | |
| 7145 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2370 | type I glutamate--ammonia ligase | |||
| 2375 | R | Hpyfe52GmrSDP (90% identity) | Hpyfe78GmrSDP | |
| 2380 | 50S ribosomal protein L9 | |||
| 2955 | sel1 repeat family protein | |||
| 2960 | R | HpyYN483GmrSD2P (97% identity) | Hpyfe78GmrSD2P | |
| 2965 | NAD(P)H-dependent oxidoreductase | |||