Helicobacter pylori Hpfe079 |
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Putative Helicobacter pylori Hpfe079 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,622,213 bp
GenBank #: CP094101
REBASE acronym: Hpyfe79
Org_num: 57325
All begin MPF96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | type I restriction endonuclease | |||
| 2985 | M | M.Hpyfe72ORF2975P (98% identity) | CCANNNNNNRTC | M.Hpyfe79ORF2985P |
| 2990 | S | S.Hpyfe85ORF3295P (96% identity) | CCANNNNNNRTC | S.Hpyfe79ORF2985P |
| 2995 | R | HpyOK30ORFWP (96% identity) | CCANNNNNNRTC | Hpyfe79ORF2985P |
| 3000 | hydroxyethylthiazole kinase | |||
| 3280 | cadmium-translocating P-type ATPase | |||
| 3285 | S | S.HpySG17ORF3685P (94% identity) | GAANNNNNNRTC | S.Hpyfe79ORF3285P |
| 3290 | outer membrane beta-barrel protein HofF | |||
| 4870 | type I restriction endonuclease | |||
| 4875 | R | Hpyfe107ORF3220P (99% identity) | CGANNNNNNTAA | Hpyfe79ORF4880P |
| 4880 | M | M.Hpyfe107ORF3220P (97% identity) | CGANNNNNNTAA | M.Hpyfe79ORF4880P |
| 4885 | S | S.Hpyfe107ORF3220P (99% identity) | CGANNNNNNTAA | S.Hpyfe79ORF4880P |
| 4895 | RNA degradosome polyphosphate kinase | |||
| 7735 | M48 family metallopeptidase | |||
| 7740 | R | Hpyfe72ORF7580P (98% identity) | TCTANNNNNNCTT | Hpyfe79ORF7745P |
| 7745 | M | M.HpyK119ORF7290P (96% identity) | TCTANNNNNNCTT | M.Hpyfe79ORF7745P |
| 7750 | CAAX protease | |||
| 7755 | S | S.Hpyfe72ORF7580P (99% identity) | TCTANNNNNNCTT | S.Hpyfe79ORF7745P |
| 7760 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 718 aa hypothetical protein | |||
| 60 | RM | Hpybs3ORFE1P (87% identity) | Hpyfe79ORF60P | |
| 65 | transcription termination factor NusA | |||
| 555 | UDP-N-acetylmuramate dehydrogenase | |||
| 560 | M | M.HpyNP07ORF6655P (93% identity) | M.Hpyfe79ORF560P | |
| 565 | R | HpyU005ORF6500P (99% identity) | Hpyfe79ORF560P | |
| 570 | glycosyltransferase family 8 protein | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | Hpyfe107ORF1400P (100% identity) | CATG | Hpyfe79ORF1415P |
| 1415 | M | M.Hpyfe107ORF1400P (99% identity) | CATG | M.Hpyfe79ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.HpyF210ORF1113P (98% identity) | GCGC | M.Hpyfe79ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | HpyK052ORF5040P (100% identity) | TCNNGA | Hpyfe79ORF2055P |
| 2055 | M | M.Hpyfe107ORF6060P (100% identity) | TCNNGA | M.Hpyfe79ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.HpySWT12XI (98% identity) | GTNNAC | M.Hpyfe79ORF2705P |
| 2710 | R | HpyKH4ORFLP (99% identity) | GTNNAC | Hpyfe79ORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 3815 | (Fe-S)-binding protein | |||
| 3820 | RM | Hpyfe78ORF3145P (90% identity) | Hpyfe79ORF3820P | |
| 3825 | outer membrane protein | |||
| 4770 | catalase | |||
| 4775 | R | Hpyfe107ORF3320P (100% identity) | ACGT | Hpyfe79ORF4780P |
| 4780 | M | M.Hpyfe107ORF3320P (100% identity) | ACGT | M.Hpyfe79ORF4780P |
| 4785 | translational GTPase TypA | |||
| 4790 | lipopolysaccharide heptosyltransferase family | |||
| 4795 | M | M.Hpyfe107ORF3305P (99% identity) | ATTAAT | M.Hpyfe79ORF4795P |
| 4800 | Hop family outer membrane protein HopJ/HopK | |||
| 5745 | AAA family ATPase | |||
| 5750 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe79ORF5750P |
| 5755 | R | Hpyfe107ORF2350P (100% identity) | CCGG | Hpyfe79ORF5750P |
| 5760 | exodeoxyribonuclease VII large subunit | |||
| 6170 | pseudaminic acid synthase | |||
| 6175 | R | R2.Hpyfe107ORF1915P (100% identity) | R1.Hpyfe79ORF6175P | |
| 6180 | R | R1.Hpyfe107ORF1915P (100% identity) | R2.Hpyfe79ORF6175P | |
| 6185 | elongation factor P | |||
| 6435 | ACP S-malonyltransferase | |||
| 6445 | R | Hpyfe107ORF1645P (98% identity) | GATC | Hpyfe79ORF6450P |
| 6450 | M | M.Hpyfe32ORF6740P (99% identity) | GATC | M.Hpyfe79ORF6450P |
| 6455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7005 | DNA cytosine methyltransferase | |||
| 7010 | R | Hpyfe107ORF7030P (100% identity) | GTSAC | Hpyfe79ORF7015P |
| 7015 | M | M.Hpyfe63ORF7595P (100% identity) | GTSAC | M.Hpyfe79ORF7015P |
| 7020 | HNH endonuclease | |||
| 7015 | site-specific DNA-methyltransferase | |||
| 7020 | R | HpyUM085ORF5660P (96% identity) | CCTC | Hpyfe79ORF7025P |
| 7025 | M | M1.Hpyfe114ORF6815P (98% identity) | CCTC | M1.Hpyfe79ORF7025P |
| 7030 | M | M.Hpy334ORFAP (99% identity) | CCTC | M2.Hpyfe79ORF7025P |
| 7035 | agmatine deiminase | |||
| 7080 | DNA methyltransferase | |||
| 7085 | R | Hpyfe107ORF7105P (100% identity) | GANTC | Hpyfe79ORF7090P |
| 7090 | M | M.Hpyfe107ORF7105P (99% identity) | GANTC | M.Hpyfe79ORF7090P |
| 7095 | N-6 DNA methylase | |||
| 7090 | site-specific DNA-methyltransferase | |||
| 7095 | RM | Hpy05ORFGP (93% identity) | Hpyfe79ORF7095P | |
| 7100 | carboxylating nicotinate-nucleotide | |||
| 7150 | copper response regulator transcription factor | |||
| 7155 | R | Hpyfe118ORF7240P (98% identity) | GAAGA | Hpyfe79ORF7160P |
| 7160 | M | M1.Hpyfe70ORF7000P (99% identity) | GAAGA | M1.Hpyfe79ORF7160P |
| 7165 | M | M.Hpyfe107ORF7180P (100% identity) | GAAGA | M2.Hpyfe79ORF7160P |
| 7170 | site-specific DNA-methyltransferase | |||
| 7630 | 107 aa hypothetical protein | |||
| 7635 | R | Hpyfe107ORF7650P (100% identity) | TGCA | Hpyfe79ORF7640P |
| 7640 | M | M.Hpyfe107ORF7650P (99% identity) | TGCA | M.Hpyfe79ORF7640P |
| 7645 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPE138ORF7510P (96% identity) | M.Hpyfe79ORF40P | |
| 50 | R | Hpyfe107ORF40P (99% identity) | Hpyfe79ORF40P | |
| 55 | 718 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | HpyAR10ORF6595P (93% identity) | Hpyfe79ORF635P | |
| 635 | M | M.HpyHK721ORFHP (94% identity) | M.Hpyfe79ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 7165 | site-specific DNA-methyltransferase | |||
| 7170 | M | M.Hpy39ORFQP (95% identity) | M.Hpyfe79ORF7170P | |
| 7175 | R | HpyML3ORFJP (95% identity) | Hpyfe79ORF7170P | |
| 7180 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4040 | NAD(P)H-dependent oxidoreductase | |||
| 4045 | R | Hpyfe107GmrSDP (97% identity) | Hpyfe79GmrSD2P | |
| 4050 | sel1 repeat family protein | |||
| 4620 | 50S ribosomal protein L9 | |||
| 4625 | R | Hpy1136GmrSDP (88% identity) | Hpyfe79GmrSDP | |
| 4630 | type I glutamate--ammonia ligase | |||