Helicobacter pylori Hpfe080 |
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Putative Helicobacter pylori Hpfe080 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,563,024 bp
GenBank #: CP094099
REBASE acronym: Hpyfe80
Org_num: 57326
All begin MPG36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4580 | hydroxyethylthiazole kinase | |||
| 4585 | R | HpySG13ORF4085P (96% identity) | Hpyfe80ORF4595P | |
| 4590 | S | S.HpyMM08ORF4005P (97% identity) | S.Hpyfe80ORF4595P | |
| 4595 | M | M.Hpyfe81ORF2925P (96% identity) | M.Hpyfe80ORF4595P | |
| 4600 | phosphatase PAP2 family protein | |||
| 4860 | type I restriction endonuclease | |||
| 4865 | R | HpyMKM1ORF464P (69% identity) | CCANNNNNNTC | Hpyfe80ORF4870P |
| 4870 | M | M.Hpyfe72ORF4875P (97% identity) | CCANNNNNNTC | M.Hpyfe80ORF4870P |
| 4875 | S | S.HpyCA6III (98% identity) | CCANNNNNNTC | S.Hpyfe80ORF4870P |
| 4885 | RNA degradosome polyphosphate kinase | |||
| 7445 | M48 family metallopeptidase | |||
| 7450 | R | Hpyfe23ORF7685P (97% identity) | CRTANNNNNNNTC | Hpyfe80ORF7455P |
| 7455 | M | M.HpyJA109ORF7240P (94% identity) | CRTANNNNNNNTC | M.Hpyfe80ORF7455P |
| 7460 | CAAX protease | |||
| 7465 | S | S.HpyTW06ORF7265P (95% identity) | CRTANNNNNNNTC | S.Hpyfe80ORF7455P |
| 7470 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyTW03XVI (93% identity) | Hpyfe80ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpy5086ORF1440P (97% identity) | CCATC | Hpyfe80ORF140P |
| 140 | M | M1.Hpyfe56ORF140P (99% identity) | CCATC | M1.Hpyfe80ORF140P |
| 145 | M | M2.Hpyfe88ORF155P (98% identity) | CCATC | M2.Hpyfe80ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpyfe66ORF270P (97% identity) | CYANNNNNNTTC | Hpyfe80ORF280P |
| 285 | S | S.HpyTW03ORF6950P (96% identity) | S.Hpyfe80ORF280P | |
| 290 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpyF210ORF1198P (88% identity) | CATG | Hpyfe80ORF1405P |
| 1405 | M | M.HpyK25I (97% identity) | CATG | M.Hpyfe80ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyUM111ORF6900P (98% identity) | GCGC | M.Hpyfe80ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | Hpyfe22ORF2065P (99% identity) | TCNNGA | Hpyfe80ORF2045P |
| 2045 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe80ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2705 | ATP-dependent helicase | |||
| 2710 | M | M.Hpyfe115ORF2725P (98% identity) | GTNNAC | M.Hpyfe80ORF2710P |
| 2715 | R | Hpyfe101ORF2705P (95% identity) | GTNNAC | Hpyfe80ORF2710P |
| 2720 | flagellar hook protein FlgE | |||
| 2905 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2910 | M | M.Hpyfe71ORF3060P (99% identity) | GTAC | M.Hpyfe80ORF2910P |
| 2915 | R | HpySG08XIIP (98% identity) | GTAC | Hpyfe80ORF2910P |
| 2920 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3710 | (Fe-S)-binding protein | |||
| 3715 | RM | Hpyfe13ORF3910P (92% identity) | Hpyfe80ORF3715P | |
| 3720 | outer membrane protein | |||
| 4750 | catalase | |||
| 4755 | R | Hpyfe106ORF4905P (98% identity) | ACGT | Hpyfe80ORF4760P |
| 4760 | M | M.HpyK101ORF2295P (99% identity) | ACGT | M.Hpyfe80ORF4760P |
| 4765 | GIY-YIG nuclease family protein | |||
| 4760 | DNA cytosine methyltransferase | |||
| 4765 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe80ORF4770P |
| 4770 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe80ORF4770P |
| 4775 | translational GTPase TypA | |||
| 4780 | lipopolysaccharide heptosyltransferase family | |||
| 4785 | M | M.HpyK029II (99% identity) | ATTAAT | M.Hpyfe80ORF4785P |
| 4790 | Hop family outer membrane protein HopJ/HopK | |||
| 5300 | group I intron-associated PD-(D/E)XK | |||
| 5305 | M | M.Hpyfe99ORF5630P (99% identity) | GCNGC | M.Hpyfe80ORF5305P |
| 5310 | translation elongation factor 4 | |||
| 5500 | 119 aa hypothetical protein | |||
| 5505 | M | M.Hpyfe78ORF1470P (99% identity) | CTNAG | M.Hpyfe80ORF5505P |
| 5510 | R | HpyT029VIP (98% identity) | CTNAG | Hpyfe80ORF5505P |
| 5515 | polysaccharide deacetylase | |||
| 5745 | AAA family ATPase | |||
| 5750 | M | M.HpyTW08V (99% identity) | CCGG | M.Hpyfe80ORF5750P |
| 5755 | R | Hpyfe118ORF5980P (96% identity) | CCGG | Hpyfe80ORF5750P |
| 5760 | exodeoxyribonuclease VII large subunit | |||
| 6175 | LlaJI family restriction endonuclease | |||
| 6180 | R | R1.HpyCHN10ORF5790P (97% identity) | Hpyfe80ORF6185P | |
| 6185 | M | M2.HpyTW01ORF900P (98% identity) | M1.Hpyfe80ORF6185P | |
| 6190 | M | M1.HpyGE16ORF875P (98% identity) | M2.Hpyfe80ORF6185P | |
| 6195 | elongation factor P | |||
| 6530 | methyl-accepting chemotaxis protein TlpB | |||
| 6535 | M | M.HpyOK316ORFTP (99% identity) | M.Hpyfe80ORF6535P | |
| 6540 | R | Hpyfe81ORF1020P (100% identity) | Hpyfe80ORF6535P | |
| 6545 | glycosyltransferase | |||
| 6590 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6595 | M | M.HpyJSHR3ORF2930P (98% identity) | GATC | M.Hpyfe80ORF6595P |
| 6600 | R | HpySG09VIIP (96% identity) | GATC | Hpyfe80ORF6595P |
| 6610 | ACP S-malonyltransferase | |||
| 6755 | sodium/proline symporter PutP | |||
| 6760 | M | M1.Hpyfe36ORF6790P (99% identity) | M1.Hpyfe80ORF6760P | |
| 6765 | M | M.Hpy334ORFAP (99% identity) | CCTC | M2.Hpyfe80ORF6760P |
| 6770 | agmatine deiminase | |||
| 6810 | S41 family peptidase | |||
| 6820 | RM | HpyJA105ORF635P (89% identity) | Hpyfe80ORF6820P | |
| 6825 | carboxylating nicotinate-nucleotide | |||
| 6875 | copper response regulator transcription factor | |||
| 6880 | R | Hpy38ORF38P (99% identity) | GAAGA | Hpyfe80ORF6885P |
| 6885 | M | M1.Hpyfe93ORF7110P (99% identity) | GAAGA | M1.Hpyfe80ORF6885P |
| 6890 | M | M2.Hpyfe82ORF7075P (99% identity) | GAAGA | M2.Hpyfe80ORF6885P |
| 6895 | site-specific DNA-methyltransferase | |||
| 7355 | 131 aa hypothetical protein | |||
| 7360 | R | HpyOK308ORFGP (98% identity) | TGCA | Hpyfe80ORF7365P |
| 7365 | M | M.HpySG12XI (99% identity) | TGCA | M.Hpyfe80ORF7365P |
| 7370 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe59ORF40P (98% identity) | M.Hpyfe80ORF40P | |
| 50 | R | Hpyfe89ORF40P (97% identity) | Hpyfe80ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | Hpyfe92ORF650P (95% identity) | Hpyfe80ORF635P | |
| 635 | M | M.HpyF227ORFXP (98% identity) | M.Hpyfe80ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 6890 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe32ORF7095P (98% identity) | M.Hpyfe80ORF6895P | |
| 6900 | R | Hpybs1ORFLP (97% identity) | Hpyfe80ORF6895P | |
| 6905 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2955 | type I glutamate--ammonia ligase | |||
| 2960 | R | Hpy51NGmrSDP (85% identity) | Hpyfe80GmrSDP | |
| 2965 | 50S ribosomal protein L9 | |||
| 3525 | sel1 repeat family protein | |||
| 3530 | R | HpySG24GmrSD2P (97% identity) | Hpyfe80GmrSD2P | |
| 3535 | NAD(P)H-dependent oxidoreductase | |||