Helicobacter pylori Hpfe081 |
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Putative Helicobacter pylori Hpfe081 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,573,286 bp
GenBank #: CP094098
REBASE acronym: Hpyfe81
Org_num: 57327
All begin MPG76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2645 | RNA degradosome polyphosphate kinase | |||
| 2655 | S | S.HpySG02V (98% identity) | CTANNNNNNTC | S.Hpyfe81ORF2660P |
| 2660 | M | M.HpyCHN4ORF2250P (97% identity) | CTANNNNNNTC | M.Hpyfe81ORF2660P |
| 2665 | R | Hpyfe8ORF2045P (96% identity) | CTANNNNNNTC | Hpyfe81ORF2660P |
| 2670 | type I restriction endonuclease | |||
| 2920 | phosphatase PAP2 family protein | |||
| 2925 | M | M.Hpyfe80ORF4595P (96% identity) | M.Hpyfe81ORF2925P | |
| 2930 | S | S.Hpyfe12ORF2980P (93% identity) | S.Hpyfe81ORF2925P | |
| 2935 | R | Hpyfe19ORF2995P (97% identity) | Hpyfe81ORF2925P | |
| 2940 | hydroxyethylthiazole kinase | |||
| 3220 | cadmium-translocating P-type ATPase | |||
| 3225 | S | S.Hpy1838CII (96% identity) | AAGNNNNNNCTT | S.Hpyfe81ORF3225P |
| 3230 | outer membrane beta-barrel protein HofF | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyK006XII (94% identity) | Hpyfe81ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | Hpyfe38ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe81ORF270P |
| 275 | S | S.HpyMA05ORF6975P (97% identity) | S.Hpyfe81ORF270P | |
| 280 | DNA polymerase I | |||
| 745 | agmatine/peptidylarginine deiminase | |||
| 750 | M | M1.HpyOK318ORFRP (100% identity) | CCTC | M1.Hpyfe81ORF750P |
| 755 | M | M2.HpyBS07ORF5785P (99% identity) | CCTC | M2.Hpyfe81ORF750P |
| 760 | R | HpyJF13ORF59P (96% identity) | CCTC | Hpyfe81ORF750P |
| 765 | restriction endonuclease | |||
| 760 | HNH endonuclease | |||
| 765 | R | HpyF226ORFIP (98% identity) | CCTTC | Hpyfe81ORF770P |
| 770 | M | M.HpyJA103ORF340P (96% identity) | CCTTC | M.Hpyfe81ORF770P |
| 775 | sodium/proline symporter PutP | |||
| 950 | ACP S-malonyltransferase | |||
| 960 | R | HpyC105IIIP (95% identity) | GATC | Hpyfe81ORF965P |
| 965 | M | M.Hpybs3ORFGP (98% identity) | GATC | M.Hpyfe81ORF965P |
| 970 | alpha-1,2-fucosyltransferase | |||
| 1010 | glycosyltransferase | |||
| 1015 | R | Hpyfe80ORF6535P (100% identity) | Hpyfe81ORF1020P | |
| 1020 | M | M.Hpyfe93ORF6640P (99% identity) | M.Hpyfe81ORF1020P | |
| 1025 | methyl-accepting chemotaxis protein TlpB | |||
| 1780 | exodeoxyribonuclease VII large subunit | |||
| 1785 | M | M.HpyK25X (99% identity) | TCGA | M.Hpyfe81ORF1785P |
| 1790 | 204 aa hypothetical protein | |||
| 1790 | 204 aa hypothetical protein | |||
| 1795 | R | HpyJ021ORF1415P (94% identity) | CCGG | Hpyfe81ORF1800P |
| 1800 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpyfe81ORF1800P |
| 1805 | AAA family ATPase | |||
| 2740 | Hop family outer membrane protein HopJ/HopK | |||
| 2745 | M | M.HpySG26II (98% identity) | ATTAAT | M.Hpyfe81ORF2745P |
| 2750 | lipopolysaccharide heptosyltransferase family | |||
| 2755 | translational GTPase TypA | |||
| 2760 | M | M.Hpyfe36ORF4800P (100% identity) | ACGT | M.Hpyfe81ORF2760P |
| 2765 | R | Hpyfe35ORF4900P (100% identity) | ACGT | Hpyfe81ORF2760P |
| 2770 | catalase | |||
| 3795 | outer membrane protein | |||
| 3800 | RM | HpyK005ORF3505P (82% identity) | Hpyfe81ORF3800P | |
| 3805 | (Fe-S)-binding protein | |||
| 4615 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4620 | R | HpyYN483ORFTP (90% identity) | GTAC | Hpyfe81ORF4625P |
| 4625 | M | M.Hpyfe124ORF2920P (99% identity) | GTAC | M.Hpyfe81ORF4625P |
| 4630 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4815 | flagellar hook protein FlgE | |||
| 4820 | R | Hpyfe100ORF2715P (97% identity) | GTNNAC | Hpyfe81ORF4825P |
| 4825 | M | M.Hpyfe100ORF2715P (99% identity) | GTNNAC | M.Hpyfe81ORF4825P |
| 4830 | ATP-dependent helicase | |||
| 5485 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5490 | M | M.Hpy53ORFOP (94% identity) | TCNNGA | M.Hpyfe81ORF5490P |
| 5495 | R | Hpyfe85ORF2060P (98% identity) | TCNNGA | Hpyfe81ORF5490P |
| 5500 | Laminin subunit alpha-2 precursor | |||
| 5680 | 144 aa hypothetical protein | |||
| 5685 | M | M.HpyCHN7XIV (98% identity) | GCGC | M.Hpyfe81ORF5685P |
| 5690 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6150 | HAD family hydrolase | |||
| 6155 | M | M.HpyMA23I (98% identity) | CATG | M.Hpyfe81ORF6155P |
| 6160 | R | HpyJ028IP (55% identity) | CATG | Hpyfe81ORF6155P |
| 6165 | 38 aa hypothetical protein | |||
| 6870 | DNA methyltransferase | |||
| 6875 | R | HpyU011VIIIP (98% identity) | GANTC | Hpyfe81ORF6880P |
| 6880 | M | M.Hpyfe10ORF6990P (99% identity) | GANTC | M.Hpyfe81ORF6880P |
| 6885 | N-6 DNA methylase | |||
| 6880 | site-specific DNA-methyltransferase | |||
| 6885 | RM | HpyOK303ORFMP (89% identity) | Hpyfe81ORF6885P | |
| 6890 | carboxylating nicotinate-nucleotide | |||
| 7415 | 71 aa hypothetical protein | |||
| 7420 | R | Hpyfe19ORF7540P (100% identity) | TGCA | Hpyfe81ORF7425P |
| 7425 | M | M.HpyK042II (98% identity) | TGCA | M.Hpyfe81ORF7425P |
| 7430 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyP34ORFLP (97% identity) | M.Hpyfe81ORF40P | |
| 45 | R | HpyTW04ORF7140P (97% identity) | Hpyfe81ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | HpyOK310ORFCP (93% identity) | Hpyfe81ORF625P | |
| 625 | M | M.HpyDU8AORFUP (82% identity) | M.Hpyfe81ORF625P | |
| 630 | DNA/RNA non-specific endonuclease | |||
| 6940 | copper response regulator transcription factor | |||
| 6945 | M | M.Hpyfe97ORF7225P (97% identity) | M.Hpyfe81ORF6945P | |
| 6950 | R | Hpyfe32ORF7095P (93% identity) | Hpyfe81ORF6945P | |
| 6955 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3980 | NAD(P)H-dependent oxidoreductase | |||
| 3985 | R | Hpy4105GmrSDP (95% identity) | Hpyfe81GmrSDP | |
| 3990 | sel1 repeat family protein | |||
| 4565 | 50S ribosomal protein L9 | |||
| 4570 | R | Hpy05GmrSDP (89% identity) | Hpyfe81GmrSD2P | |
| 4575 | type I glutamate--ammonia ligase | |||