Helicobacter pylori Hpfe082 |
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Putative Helicobacter pylori Hpfe082 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,613,588 bp
GenBank #: CP094096
REBASE acronym: Hpyfe82
Org_num: 57328
All begin MPG69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4845 | motility associated factor glycosyltransferase | |||
| 4850 | R | Hpyfe104ORF3000P (96% identity) | Hpyfe82ORF4855P | |
| 4855 | M | M.Hpyfe5ORF5065P (97% identity) | M.Hpyfe82ORF4855P | |
| 4860 | S | S.HpyI017ORF2160P (95% identity) | S.Hpyfe82ORF4855P | |
| 4870 | RNA degradosome polyphosphate kinase | |||
| 7655 | M48 family metallopeptidase | |||
| 7660 | R | HpyUM085ORF3775P (88% identity) | Hpyfe82ORF7665P | |
| 7665 | M | M.HpyOK311ORFNP (97% identity) | M.Hpyfe82ORF7665P | |
| 7670 | CAAX protease | |||
| 7675 | S | S.Hpyfe38ORF7575P (59% identity) | S.Hpyfe82ORF7665P | |
| 7680 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 65 | 407 aa hypothetical protein | |||
| 70 | RM | Hpyfe28ORF55P (94% identity) | Hpyfe82ORF70P | |
| 75 | transcription termination factor NusA | |||
| 140 | outer membrane protein | |||
| 145 | R | Hpyfe75ORF215P (98% identity) | CCATC | Hpyfe82ORF150P |
| 150 | M | M2.HpyTW20VI (93% identity) | CCATC | M1.Hpyfe82ORF150P |
| 155 | M | M1.HpyK115II (98% identity) | CCATC | M2.Hpyfe82ORF150P |
| 160 | LptF/LptG family permease | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyTW09ORF6875P (98% identity) | CYANNNNNNTTC | Hpyfe82ORF290P |
| 295 | S | S.Hpyfe21ORF285P (99% identity) | S.Hpyfe82ORF290P | |
| 300 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpy66XIP (96% identity) | CATG | Hpyfe82ORF1405P |
| 1405 | M | M.HpySG04I (98% identity) | CATG | M.Hpyfe82ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1845 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1850 | M | M.Hpyfe21ORF6045P (99% identity) | GCGC | M.Hpyfe82ORF1850P |
| 1855 | R | Hpyfe21ORF6045P (100% identity) | GCGC | Hpyfe82ORF1850P |
| 1860 | 144 aa hypothetical protein | |||
| 2030 | Laminin subunit alpha-2 precursor | |||
| 2035 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | Hpyfe82ORF2040P |
| 2040 | M | M.Hpyfe118ORF2240P (100% identity) | TCNNGA | M.Hpyfe82ORF2040P |
| 2045 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2680 | ATP-dependent helicase | |||
| 2685 | M | M.HpyTW24XIV (97% identity) | GTNNAC | M.Hpyfe82ORF2685P |
| 2690 | R | Hpy199ORFRP (96% identity) | GTNNAC | Hpyfe82ORF2685P |
| 2695 | flagellar hook protein FlgE | |||
| 3250 | cadmium-translocating P-type ATPase | |||
| 3255 | M | M.HpyCOL306ORF3800P (100% identity) | GCSGC | M.Hpyfe82ORF3255P |
| 3260 | R | HpyU001ORF2750P (99% identity) | GCSGC | Hpyfe82ORF3255P |
| 3265 | outer membrane beta-barrel protein HofF | |||
| 4640 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4645 | R | HpySG33IXP (97% identity) | GTAC | Hpyfe82ORF4650P |
| 4650 | M | M.HpyCHN7X (99% identity) | GTAC | M.Hpyfe82ORF4650P |
| 4655 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4740 | catalase | |||
| 4745 | R | Hpyfe103ORF4775P (98% identity) | ACGT | Hpyfe82ORF4750P |
| 4750 | M | M.HpyUM038ORF8675P (98% identity) | ACGT | M.Hpyfe82ORF4750P |
| 4755 | GIY-YIG nuclease family protein | |||
| 4750 | DNA cytosine methyltransferase | |||
| 4755 | R | HpyK93ORF5010P (100% identity) | ACNGT | Hpyfe82ORF4760P |
| 4760 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe82ORF4760P |
| 4765 | translational GTPase TypA | |||
| 4770 | lipopolysaccharide heptosyltransferase family | |||
| 4775 | M | M.Hpyfe36ORF4825P (98% identity) | ATTAAT | M.Hpyfe82ORF4775P |
| 4780 | Hop family outer membrane protein HopJ/HopK | |||
| 5290 | 67 aa hypothetical protein | |||
| 5295 | M | M.HpyPU006ORF1745P (99% identity) | GCNGC | M.Hpyfe82ORF5295P |
| 5300 | translation elongation factor 4 | |||
| 5870 | AAA family ATPase | |||
| 5875 | M | M.Hpyfe93ORF5875P (64% identity) | M.Hpyfe82ORF5875P | |
| 5880 | R | HpyCHN1ORF5450P (94% identity) | Hpyfe82ORF5875P | |
| 5885 | exodeoxyribonuclease VII large subunit | |||
| 6545 | ACP S-malonyltransferase | |||
| 6555 | R | Hpy192ORFDP (95% identity) | GATC | Hpyfe82ORF6560P |
| 6560 | M | M.HpyK043II (98% identity) | GATC | M.Hpyfe82ORF6560P |
| 6565 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6925 | sodium/proline symporter PutP | |||
| 6930 | M | M2.HpyHP32IVP (98% identity) | M1.Hpyfe82ORF6930P | |
| 6935 | M | M1.HpyCA15III (98% identity) | CCTC | M2.Hpyfe82ORF6930P |
| 6940 | agmatine deiminase | |||
| 6985 | DNA methyltransferase | |||
| 6990 | R | HpySP707ORF7160P (73% identity) | Hpyfe82ORF7005P | |
| 6995 | winged helix-turn-helix domain-containing | |||
| 7000 | 56 aa hypothetical protein | |||
| 7005 | M | M.Hpyfe95ORF6900P (40% identity) | M.Hpyfe82ORF7005P | |
| 7010 | N-6 DNA methylase | |||
| 7005 | site-specific DNA-methyltransferase | |||
| 7010 | RM | HpyTW08ORF260P (89% identity) | Hpyfe82ORF7010P | |
| 7015 | carboxylating nicotinate-nucleotide | |||
| 7065 | copper response regulator transcription factor | |||
| 7070 | R | HpyJSHR6ORF13800P (98% identity) | GAAGA | Hpyfe82ORF7075P |
| 7075 | M | M2.HpyCHN9VIII (100% identity) | GAAGA | M1.Hpyfe82ORF7075P |
| 7080 | M | M2.Hpyfe6ORF6865P (100% identity) | GAAGA | M2.Hpyfe82ORF7075P |
| 7085 | site-specific DNA-methyltransferase | |||
| 7555 | 134 aa hypothetical protein | |||
| 7560 | R | HpyOK312ORFGP (98% identity) | TGCA | Hpyfe82ORF7565P |
| 7565 | M | M.HpyMA15IX (99% identity) | TGCA | M.Hpyfe82ORF7565P |
| 7570 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyCOL202ORF7110P (96% identity) | M.Hpyfe82ORF40P | |
| 50 | R | HpyK023ORF7170P (95% identity) | Hpyfe82ORF40P | |
| 55 | phage infection protein | |||
| 630 | biotin synthase | |||
| 635 | R | Hpyfe92ORF650P (95% identity) | Hpyfe82ORF640P | |
| 640 | M | M.Hpyfe13ORF805P (97% identity) | M.Hpyfe82ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| 7080 | site-specific DNA-methyltransferase | |||
| 7085 | M | M.HpyCA10ORF4605P (96% identity) | M.Hpyfe82ORF7085P | |
| 7090 | R | HpyU011ORF200P (96% identity) | Hpyfe82ORF7085P | |
| 7095 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4015 | NAD(P)H-dependent oxidoreductase | |||
| 4020 | R | Hpyfe70GmrSDP (95% identity) | Hpyfe82GmrSDP | |
| 4025 | sel1 repeat family protein | |||
| 4600 | 50S ribosomal protein L9 | |||
| 4605 | R | HpySG15GmrSDP (89% identity) | Hpyfe82GmrSD2P | |
| 4610 | type I glutamate--ammonia ligase | |||