Helicobacter pylori Hpfe083 |
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Putative Helicobacter pylori Hpfe083 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,577,172 bp
GenBank #: CP094095
REBASE acronym: Hpyfe83
Org_num: 57329
All begin MPG47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4610 | hydroxyethylthiazole kinase | |||
| 4615 | R | Hpyfe72ORF2975P (97% identity) | CAANNNNNNNTTG | Hpyfe83ORF4625P |
| 4620 | S | S.HpyV007XII (98% identity) | CAANNNNNNNTTG | S.Hpyfe83ORF4625P |
| 4625 | M | M.HpySG36ORF4175P (96% identity) | CAANNNNNNNTTG | M.Hpyfe83ORF4625P |
| 4630 | DNA cytosine methyltransferase | |||
| 4895 | type I restriction endonuclease | |||
| 4900 | R | HpyK025VP (70% identity) | CTANNNNNNTC | Hpyfe83ORF4905P |
| 4905 | M | M.Hpyfe58ORF5150P (97% identity) | CTANNNNNNTC | M.Hpyfe83ORF4905P |
| 4910 | S | S.HpySG15ORF2445P (98% identity) | CTANNNNNNTC | S.Hpyfe83ORF4905P |
| 4920 | RNA degradosome polyphosphate kinase | |||
| 7525 | M48 family metallopeptidase | |||
| 7530 | R | Hpyfe23ORF7685P (97% identity) | CRTANNNNNNNTC | Hpyfe83ORF7535P |
| 7535 | M | M.Hpyfe74ORF7605P (97% identity) | CRTANNNNNNNTC | M.Hpyfe83ORF7535P |
| 7540 | S | S.HpyAR9III (98% identity) | CRTANNNNNNNTC | S.Hpyfe83ORF7535P |
| 7545 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | Hpyfe74ORF60P (92% identity) | Hpyfe83ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe40ORF140P (69% identity) | GDGCHC | Hpyfe83ORF135P |
| 135 | M | M.HpyL003ORF7450P (100% identity) | GDGCHC | M.Hpyfe83ORF135P |
| 140 | type II methylase | |||
| 530 | UDP-N-acetylmuramate dehydrogenase | |||
| 535 | M | M.HpyOK316ORFEP (99% identity) | M.Hpyfe83ORF535P | |
| 540 | R | Hpyfe71ORF555P (99% identity) | Hpyfe83ORF535P | |
| 545 | glycosyltransferase family 8 protein | |||
| 1365 | serine O-acetyltransferase | |||
| 1370 | R | HpyOK305ORFDP (97% identity) | CATG | Hpyfe83ORF1375P |
| 1375 | M | M.HpyYN483ORFDP (91% identity) | CATG | M.Hpyfe83ORF1375P |
| 1380 | HAD family hydrolase | |||
| 1840 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1845 | M | M.Hpyfe63ORF1855P (98% identity) | GCGC | M.Hpyfe83ORF1845P |
| 1850 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe83ORF2030P |
| 2030 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe83ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.Hpyfe86ORF2720P (98% identity) | GTNNAC | M.Hpyfe83ORF2705P |
| 2710 | R | Hpy3sORF5175P (97% identity) | GTNNAC | Hpyfe83ORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 2900 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2905 | M | M.HpyV004IX (97% identity) | GTAC | M.Hpyfe83ORF2905P |
| 2910 | R | Hpyfe2ORF2875P (98% identity) | GTAC | Hpyfe83ORF2905P |
| 2915 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3800 | outer membrane protein | |||
| 3805 | RM | HpyPU007ORF3130P (86% identity) | Hpyfe83ORF3805P | |
| 3810 | (Fe-S)-binding protein | |||
| 4625 | type I restriction-modification system subunit | |||
| 4630 | M | M.Hpyfe2ORF4780P (100% identity) | GGCC | M.Hpyfe83ORF4630P |
| 4635 | R | Hpyfe2ORF4780P (99% identity) | GGCC | Hpyfe83ORF4630P |
| 4640 | phosphatase PAP2 family protein | |||
| 4785 | catalase | |||
| 4790 | R | HpyK042ORF2340P (99% identity) | ACGT | Hpyfe83ORF4795P |
| 4795 | M | M.Hpyfe2ORF4945P (99% identity) | ACGT | M.Hpyfe83ORF4795P |
| 4800 | GIY-YIG nuclease family protein | |||
| 4795 | DNA cytosine methyltransferase | |||
| ??? | R | Hpyfe32ORF4930P (98% identity) | ACNGT | Hpyfe83ORF4805P |
| 4805 | M | M.Hpyfe2ORF4955P (99% identity) | ACNGT | M.Hpyfe83ORF4805P |
| 4810 | translational GTPase TypA | |||
| 4815 | lipopolysaccharide heptosyltransferase family | |||
| 4820 | M | M.Hpyfe39ORF4900P (98% identity) | ATTAAT | M.Hpyfe83ORF4820P |
| 4825 | Hop family outer membrane protein HopJ/HopK | |||
| 5330 | group I intron-associated PD-(D/E)XK | |||
| 5335 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpyfe83ORF5335P |
| 5340 | translation elongation factor 4 | |||
| 5765 | AAA family ATPase | |||
| 5770 | M | M.Hpy1100ORFAP (98% identity) | CCGG | M.Hpyfe83ORF5770P |
| 5775 | R | Hpy274ORF339P (93% identity) | CCGG | Hpyfe83ORF5770P |
| 5780 | exodeoxyribonuclease VII large subunit | |||
| 6185 | pseudaminic acid synthase | |||
| 6190 | R | R1.Hpyfe70ORF6305P (98% identity) | R1.Hpyfe83ORF6190P | |
| 6195 | R | R2.Hpyfe57ORF6310P (95% identity) | R2.Hpyfe83ORF6190P | |
| 6200 | 95 aa hypothetical protein | |||
| 6600 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6605 | M | M.HpySP207VIII (96% identity) | GATC | M.Hpyfe83ORF6605P |
| 6610 | R | HpyTW10VIP (97% identity) | GATC | Hpyfe83ORF6605P |
| 6620 | ACP S-malonyltransferase | |||
| 6800 | DNA cytosine methyltransferase | |||
| 6805 | R | Hpyfe96ORF6885P (96% identity) | CCTC | Hpyfe83ORF6810P |
| 6810 | M | M1.Hpyfe2ORF6990P (99% identity) | CCTC | M1.Hpyfe83ORF6810P |
| 6815 | M | M2.Hpyfe32ORF6945P (98% identity) | CCTC | M2.Hpyfe83ORF6810P |
| 6820 | agmatine deiminase | |||
| 6865 | DNA methyltransferase | |||
| 6870 | R | HpySG38XP (96% identity) | GANTC | Hpyfe83ORF6875P |
| 6875 | M | M.HpyJF13ORF49P (99% identity) | GANTC | M.Hpyfe83ORF6875P |
| 6880 | DNA methyltransferase | |||
| 6880 | DNA methyltransferase | |||
| 6885 | RM | HpyK043ORF275P (85% identity) | Hpyfe83ORF6885P | |
| 6890 | carboxylating nicotinate-nucleotide | |||
| 6940 | copper response regulator transcription factor | |||
| 6945 | R | HpyK027VP (99% identity) | GAAGA | Hpyfe83ORF6950P |
| 6950 | M | M2.HpySG08VIII (99% identity) | GAAGA | M1.Hpyfe83ORF6950P |
| 6955 | M | M2.Hpyfe118ORF7240P (99% identity) | GAAGA | M2.Hpyfe83ORF6950P |
| 6960 | site-specific DNA-methyltransferase | |||
| 7420 | 105 aa hypothetical protein | |||
| 7425 | R | Hpyfe51ORF7620P (99% identity) | TGCA | Hpyfe83ORF7430P |
| 7430 | M | M.HpySG36X (98% identity) | TGCA | M.Hpyfe83ORF7430P |
| 7435 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyMA15ORF7250P (97% identity) | M.Hpyfe83ORF40P | |
| 45 | R | HpyTW02ORF6990P (97% identity) | Hpyfe83ORF40P | |
| 50 | 717 aa hypothetical protein | |||
| 595 | biotin synthase | |||
| 600 | R | HpySG18XVIIIP (89% identity) | Hpyfe83ORF605P | |
| ??? | M | M.Hpyfe93ORF625P (94% identity) | M.Hpyfe83ORF605P | |
| 615 | DNA/RNA non-specific endonuclease | |||
| 6955 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyLIM7ORFXP (95% identity) | M.Hpyfe83ORF6960P | |
| 6965 | R | HpyTW19XVP (96% identity) | Hpyfe83ORF6960P | |
| 6970 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | type I glutamate--ammonia ligase | |||
| 2955 | R | Hpyfe52GmrSDP (90% identity) | Hpyfe83GmrSDP | |
| 2960 | 50S ribosomal protein L9 | |||
| 3555 | sel1 repeat family protein | |||
| 3560 | R | HpyCHN4GmrSD2P (93% identity) | Hpyfe83GmrSD2P | |
| 3565 | NAD(P)H-dependent oxidoreductase | |||