Helicobacter pylori Hpfe084 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe084 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,629,886 bp
GenBank #: CP094094
REBASE acronym: Hpyfe84
Org_num: 57330
All begin MPG19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4610 | outer membrane beta-barrel protein HofF | |||
| 4615 | S | S.Hpyfe84ORF4915P (100% identity) | CAANNNNNNNNTAG | S.Hpyfe84ORF4615P |
| 4620 | cadmium-translocating P-type ATPase | |||
| 4900 | hydroxyethylthiazole kinase | |||
| 4905 | R | Hpyfe1ORF4805P (97% identity) | CAANNNNNNNNTAG | Hpyfe84ORF4915P |
| 4910 | S | S.Hpyfe84ORF4615P (100% identity) | CAANNNNNNNNTAG | S.Hpyfe84ORF4915P |
| 4915 | M | M.Hpyfe86ORF2990P (90% identity) | CAANNNNNNNNTAG | M.Hpyfe84ORF4915P |
| 4920 | DNA cytosine methyltransferase | |||
| 7855 | M48 family metallopeptidase | |||
| 7860 | R | HpyGC26ORFE1P (97% identity) | CAANNNNNNNTAYG | Hpyfe84ORF7865P |
| 7865 | M | M.Hpy417ORF7480P (97% identity) | CAANNNNNNNTAYG | M.Hpyfe84ORF7865P |
| 7870 | CAAX protease | |||
| 7875 | S | S.HpyK28V (97% identity) | CAANNNNNNNTAYG | S.Hpyfe84ORF7865P |
| 7880 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| ??? | RM | HpyOK304ORFGAP (48% identity) | Hpyfe84ORF60P | |
| 75 | RNA-directed DNA polymerase | |||
| 155 | outer membrane protein | |||
| 160 | R | Hpyfe11ORF135P (97% identity) | CCATC | Hpyfe84ORF160P |
| 165 | DNA adenine methylase | |||
| 400 | site-specific integrase | |||
| 405 | M | M2.HpysHP34ORF1580P (87% identity) | M1.Hpyfe84ORF405P | |
| 410 | M | M1.HpyFD568ORFI1P (98% identity) | CCATC | M2.Hpyfe84ORF405P |
| 415 | LptF/LptG family permease | |||
| 540 | ComF family protein | |||
| 545 | RM | Hpyfe1ORF445P (98% identity) | CYANNNNNNTTC | Hpyfe84ORF545P |
| 550 | S | S.HpySP507ORF7285P (95% identity) | CYANNNNNNTCC | S.Hpyfe84ORF545P |
| 555 | DNA polymerase I | |||
| 1020 | agmatine/peptidylarginine deiminase | |||
| 1025 | M | M1.HpyPU008VI (98% identity) | CCTC | M1.Hpyfe84ORF1025P |
| 1030 | M | M2.HpyK021IVP (98% identity) | CCTC | M2.Hpyfe84ORF1025P |
| 1035 | R | HpyML2ORFHP (95% identity) | CCTC | Hpyfe84ORF1025P |
| 1040 | DNA cytosine methyltransferase | |||
| 1440 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1445 | M | M.HpyCOL203VII (97% identity) | GATC | M.Hpyfe84ORF1445P |
| 1450 | HTH domain-containing protein | |||
| 2125 | exodeoxyribonuclease VII large subunit | |||
| 2130 | M | M.Hpyfe23ORF5970P (98% identity) | TCGA | M.Hpyfe84ORF2130P |
| 2135 | 204 aa hypothetical protein | |||
| 2135 | 204 aa hypothetical protein | |||
| 2140 | R | HpyF75ORF296P (91% identity) | CCGG | Hpyfe84ORF2145P |
| 2145 | M | M.Hpyfe93ORF5875P (99% identity) | CCGG | M.Hpyfe84ORF2145P |
| 2150 | AAA family ATPase | |||
| 3100 | Hop family outer membrane protein HopJ/HopK | |||
| 3105 | M | M.Hpy5ORF5760P (98% identity) | ATTAAT | M.Hpyfe84ORF3105P |
| 3110 | lipopolysaccharide heptosyltransferase family | |||
| 3115 | translational GTPase TypA | |||
| 3120 | M | M.Hpy63ORF486P (99% identity) | ACNGT | M.Hpyfe84ORF3120P |
| 3125 | R | Hpyfe97ORF5110P (99% identity) | ACNGT | Hpyfe84ORF3120P |
| 3130 | DNA cytosine methyltransferase | |||
| 3125 | GIY-YIG nuclease family protein | |||
| 3130 | M | M.Hpyfe86ORF4780P (98% identity) | ACGT | M.Hpyfe84ORF3130P |
| 3135 | R | HpyUM065ORF7975P (99% identity) | ACGT | Hpyfe84ORF3130P |
| 3140 | catalase | |||
| 4075 | outer membrane protein | |||
| 4080 | RM | Hpyfe5ORF4050P (82% identity) | Hpyfe84ORF4080P | |
| 4085 | (Fe-S)-binding protein | |||
| 4915 | type I restriction-modification system subunit | |||
| 4920 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.Hpyfe84ORF4920P |
| 4925 | R | HpyF94ORF399P (98% identity) | GGCC | Hpyfe84ORF4920P |
| 4930 | phosphatase PAP2 family protein | |||
| 5195 | flagellar hook protein FlgE | |||
| 5200 | R | HpyTW24XIVP (96% identity) | GTNNAC | Hpyfe84ORF5205P |
| 5205 | M | M.Hpyfe2ORF2675P (97% identity) | GTNNAC | M.Hpyfe84ORF5205P |
| 5210 | ATP-dependent helicase | |||
| 5865 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5870 | M | M.Hpyfe120ORF2030P (99% identity) | TCNNGA | M.Hpyfe84ORF5870P |
| 5875 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe84ORF5870P |
| 5880 | Laminin subunit alpha-2 precursor | |||
| 6050 | 144 aa hypothetical protein | |||
| 6055 | M | M.HpyF94ORF182P (99% identity) | GCGC | M.Hpyfe84ORF6055P |
| 6060 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6525 | HAD family hydrolase | |||
| 6530 | M | M.Hpyfe122ORF1405P (100% identity) | CATG | M.Hpyfe84ORF6530P |
| 6535 | R | Hpyfe36ORF1425P (53% identity) | CATG | Hpyfe84ORF6530P |
| 6540 | 38 aa hypothetical protein | |||
| 7250 | 388 aa hypothetical protein | |||
| 7255 | RM | Hpy192ORFVP (87% identity) | Hpyfe84ORF7255P | |
| 7260 | carboxylating nicotinate-nucleotide | |||
| 7765 | 156 aa hypothetical protein | |||
| 7770 | R | Hpy4105ORFCP (97% identity) | TGCA | Hpyfe84ORF7775P |
| 7775 | M | M.Hpyfe122ORF7390P (99% identity) | TGCA | M.Hpyfe84ORF7775P |
| 7780 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW21XVI (97% identity) | M.Hpyfe84ORF40P | |
| 50 | R | HpyCHN6ORF6875P (97% identity) | Hpyfe84ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 895 | biotin synthase | |||
| 900 | R | HpyK020ORF6870P (95% identity) | Hpyfe84ORF905P | |
| 905 | M | M.Hpy417ORF6800P (95% identity) | M.Hpyfe84ORF905P | |
| 910 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3270 | type I glutamate--ammonia ligase | |||
| 3275 | R | HpyBS22GmrSDP (87% identity) | Hpyfe84GmrSD2P | |
| 3280 | 50S ribosomal protein L9 | |||
| 3850 | sel1 repeat family protein | |||
| 3855 | R | HpyTW18GmrSD2P (95% identity) | Hpyfe84GmrSDP | |
| 3860 | NAD(P)H-dependent oxidoreductase | |||