Helicobacter pylori Hpfe085 |
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Putative Helicobacter pylori Hpfe085 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,574,428 bp
GenBank #: CP094093
REBASE acronym: Hpyfe85
Org_num: 57331
All begin MPF97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2990 | DNA cytosine methyltransferase | |||
| 2995 | M | M.Hpyfe115ORF3010P (96% identity) | GAANNNNNNNTGG | M.Hpyfe85ORF2995P |
| 3000 | S | S.HpyME35ORF3920P (95% identity) | GAANNNNNNNTGG | S.Hpyfe85ORF2995P |
| 3005 | R | Hpyfe103ORF4610P (96% identity) | GAANNNNNNNTGG | Hpyfe85ORF2995P |
| 3010 | hydroxyethylthiazole kinase | |||
| 3290 | cadmium-translocating P-type ATPase | |||
| 3295 | S | S.Hpyfe79ORF2985P (96% identity) | CCANNNNNNNRTC | S.Hpyfe85ORF3295P |
| 3300 | 48 aa hypothetical protein | |||
| 4870 | motility associated factor glycosyltransferase | |||
| 4875 | R | Hpy51ORF427P (94% identity) | CTANNNNNNTC | Hpyfe85ORF4880P |
| 4880 | M | M.Hpyfe114ORF4890P (98% identity) | CTANNNNNNTC | M.Hpyfe85ORF4880P |
| 4885 | S | S.HpyTW24XI (97% identity) | CTANNNNNNTC | S.Hpyfe85ORF4880P |
| 4895 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyHP76XIII (94% identity) | Hpyfe85ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe85ORF135P |
| 135 | M | M1.Hpyfe93ORF140P (98% identity) | CCATC | M1.Hpyfe85ORF135P |
| 140 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.Hpyfe85ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | HpyTW24ORF7170P (99% identity) | CYANNNNNNTTC | Hpyfe85ORF275P |
| 280 | S | S1.HpyMA10ORF7050P (98% identity) | S1.Hpyfe85ORF275P | |
| 285 | S | S.Hpy673ORF7355P (99% identity) | S2.Hpyfe85ORF275P | |
| 290 | DNA polymerase I | |||
| 1405 | IceA2 protein | |||
| 1410 | M | M.HpyP89ORFLP (91% identity) | CATG | M.Hpyfe85ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.Hpyfe104ORF6105P (97% identity) | GCGC | M.Hpyfe85ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe83ORF2030P (100% identity) | TCNNGA | Hpyfe85ORF2060P |
| 2060 | M | M.HpyGD63ORF5765P (99% identity) | TCNNGA | M.Hpyfe85ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.HpyTW24XIV (96% identity) | GTNNAC | M.Hpyfe85ORF2720P |
| 2725 | R | HpyTW18ORF4490P (91% identity) | GTNNAC | Hpyfe85ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 2980 | phosphatase PAP2 family protein | |||
| 2985 | R | HpyTW06ORF4260P (98% identity) | GGCC | Hpyfe85ORF2990P |
| 2990 | M | M.Hpyfe59ORF4670P (100% identity) | GGCC | M.Hpyfe85ORF2990P |
| 2995 | type I restriction-modification system subunit | |||
| 3780 | 3-5 exonuclease | |||
| 3785 | R | HpyUM085ORF1970P (100% identity) | GGNNCC | Hpyfe85ORF3790P |
| 3790 | M | M.HpyK117ORF3455P (97% identity) | M.Hpyfe85ORF3790P | |
| 3795 | 3-5 exonuclease | |||
| 3865 | outer membrane protein | |||
| 3870 | RM | Hpyfe13ORF3910P (93% identity) | Hpyfe85ORF3870P | |
| 3875 | (Fe-S)-binding protein | |||
| 4680 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4685 | R | HpyMA18XIIP (98% identity) | GTAC | Hpyfe85ORF4690P |
| 4690 | M | M.HpyTW20III (99% identity) | GTAC | M.Hpyfe85ORF4690P |
| 4695 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4775 | catalase | |||
| 4780 | R | HpyK051ORF2560P (99% identity) | ACNGT | Hpyfe85ORF4785P |
| 4785 | M | M.HpyMKM6ORF482P (94% identity) | ACNGT | M.Hpyfe85ORF4785P |
| 4790 | translational GTPase TypA | |||
| 4795 | lipopolysaccharide heptosyltransferase family | |||
| 4800 | M | M.Hpyfe127ORF4890P (98% identity) | ATTAAT | M.Hpyfe85ORF4800P |
| 4805 | Hop family outer membrane protein HopJ/HopK | |||
| 5310 | group I intron-associated PD-(D/E)XK | |||
| 5315 | M | M.HpyLIM7ORFKP (99% identity) | GCNGC | M.Hpyfe85ORF5315P |
| 5320 | translation elongation factor 4 | |||
| 5775 | AAA family ATPase | |||
| 5780 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpyfe85ORF5780P |
| 5785 | R | Hpyfe97ORF6090P (91% identity) | CCGG | Hpyfe85ORF5780P |
| 5790 | 203 aa hypothetical protein | |||
| 5790 | 203 aa hypothetical protein | |||
| 5795 | M | M.Hpyfe120ORF5860P (100% identity) | TCGA | M.Hpyfe85ORF5795P |
| 5800 | exodeoxyribonuclease VII large subunit | |||
| 6590 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6595 | M | M.HpyMA15XII (97% identity) | GATC | M.Hpyfe85ORF6595P |
| 6600 | R | HpyJ029VIIP (67% identity) | GATC | Hpyfe85ORF6595P |
| 6610 | ACP S-malonyltransferase | |||
| 6785 | sodium/proline symporter PutP | |||
| 6790 | M | M1.Hpyfe1ORF7000P (98% identity) | M1.Hpyfe85ORF6790P | |
| 6795 | M | M2.Hpyfe72ORF6880P (98% identity) | CCTC | M2.Hpyfe85ORF6790P |
| 6800 | TerC family protein | |||
| 6835 | S41 family peptidase | |||
| 6845 | RM | Hpyfe123ORF7075P (66% identity) | Hpyfe85ORF6845P | |
| 6850 | carboxylating nicotinate-nucleotide | |||
| 7375 | DUF5343 domain-containing protein | |||
| 7380 | M | M.HpyT027ORF7715P (99% identity) | M.Hpyfe85ORF7380P | |
| 7385 | type II restriction endonuclease | |||
| 7380 | DNA cytosine methyltransferase | |||
| 7385 | R | HpyV003XP (97% identity) | TGCA | Hpyfe85ORF7390P |
| 7390 | M | M.HpyF210ORF1505P (99% identity) | TGCA | M.Hpyfe85ORF7390P |
| 7395 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy115ORF5220P (97% identity) | M.Hpyfe85ORF40P | |
| 50 | R | Hpyfe92ORF40P (98% identity) | Hpyfe85ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 620 | biotin synthase | |||
| 625 | R | HpySG19ORF6625P (94% identity) | Hpyfe85ORF630P | |
| 630 | M | M.HpyGU62AORFB1P (97% identity) | M.Hpyfe85ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4050 | NAD(P)H-dependent oxidoreductase | |||
| 4055 | R | HpyMA21GmrSD2P (97% identity) | Hpyfe85GmrSDP | |
| 4060 | sel1 repeat family protein | |||
| 4640 | 50S ribosomal protein L9 | |||
| 4645 | R | HpyCHN10GmrSDP (91% identity) | Hpyfe85GmrSD2P | |
| 4650 | type I glutamate--ammonia ligase | |||