Helicobacter pylori Hpfe086 |
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Putative Helicobacter pylori Hpfe086 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,588,502 bp
GenBank #: CP094092
REBASE acronym: Hpyfe86
Org_num: 57332
All begin MPG82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2985 | type I restriction endonuclease | |||
| 2990 | M | M.Hpyfe84ORF4915P (90% identity) | M.Hpyfe86ORF2990P | |
| 2995 | S | S.Hpyfe86ORF3290P (44% identity) | S.Hpyfe86ORF2990P | |
| 3000 | R | HpyU011ORF2670P (97% identity) | Hpyfe86ORF2990P | |
| 3005 | hydroxyethylthiazole kinase | |||
| 4875 | motility associated factor glycosyltransferase | |||
| 4880 | R | Hpyfe104ORF3000P (91% identity) | CTANNNNNNTC | Hpyfe86ORF4885P |
| 4885 | M | M.Hpyfe51ORF4945P (100% identity) | CTANNNNNNTC | M.Hpyfe86ORF4885P |
| 4890 | S | S.Hpyfe51ORF4945P (100% identity) | CTANNNNNNTC | S.Hpyfe86ORF4885P |
| 4900 | RNA degradosome polyphosphate kinase | |||
| 7610 | M48 family metallopeptidase | |||
| 7615 | R | Hpyfe38ORF7575P (96% identity) | Hpyfe86ORF7620P | |
| 7620 | M | M.Hpyfe5ORF7635P (98% identity) | M.Hpyfe86ORF7620P | |
| 7625 | S | S.HpyP82ORFPP (67% identity) | S.Hpyfe86ORF7620P | |
| 7630 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyV005ORF7195P (91% identity) | Hpyfe86ORF55P | |
| 60 | RNA-directed DNA polymerase | |||
| 140 | outer membrane protein | |||
| 145 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe86ORF150P |
| 150 | M | M2.HpyISR6IV (93% identity) | CCATC | M1.Hpyfe86ORF150P |
| 155 | M | M1.HpyUM023ORF1405P (99% identity) | CCATC | M2.Hpyfe86ORF150P |
| 160 | LptF/LptG family permease | |||
| 285 | ComF family protein | |||
| 290 | RM | Hpyfe6ORF265P (98% identity) | CYANNNNNNTTC | Hpyfe86ORF290P |
| 295 | S | S.HpyP96ORFXP (97% identity) | S.Hpyfe86ORF290P | |
| 300 | DNA polymerase I | |||
| 1425 | IceA2 protein | |||
| 1430 | M | M.HpySG12I (98% identity) | CATG | M.Hpyfe86ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyK007X (99% identity) | GCGC | M.Hpyfe86ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | HpyUM077ORF7775P (100% identity) | TCNNGA | Hpyfe86ORF2055P |
| 2055 | M | M.Hpyfe78ORF4965P (99% identity) | TCNNGA | M.Hpyfe86ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.Hpyfe4ORF2695P (98% identity) | GTNNAC | M.Hpyfe86ORF2720P |
| 2725 | R | Hpyfe76ORF2860P (94% identity) | GTNNAC | Hpyfe86ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 4675 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4680 | R | Hpyfe92ORF4945P (98% identity) | GTAC | Hpyfe86ORF4685P |
| 4685 | M | M.HpyNP04X (99% identity) | GTAC | M.Hpyfe86ORF4685P |
| 4690 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4770 | catalase | |||
| 4775 | R | HpyK046ORF2270P (95% identity) | ACGT | Hpyfe86ORF4780P |
| 4780 | M | M.HpySG12ORF2360P (98% identity) | ACGT | M.Hpyfe86ORF4780P |
| 4785 | GIY-YIG nuclease family protein | |||
| 4780 | DNA cytosine methyltransferase | |||
| 4785 | R | HpyDU15ORF4030P (99% identity) | ACNGT | Hpyfe86ORF4790P |
| 4790 | M | M.HpySG12II (98% identity) | ACNGT | M.Hpyfe86ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.Hpyfe29ORF4865P (97% identity) | ATTAAT | M.Hpyfe86ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5515 | 125 aa hypothetical protein | |||
| 5520 | M | M.HpyMA22VI (98% identity) | CTNAG | M.Hpyfe86ORF5520P |
| 5525 | R | HpyJF13ORF342P (96% identity) | CTNAG | Hpyfe86ORF5520P |
| 5530 | polysaccharide deacetylase | |||
| 5760 | AAA family ATPase | |||
| 5765 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe86ORF5765P |
| 5770 | R | Hpyfe126ORF5855P (96% identity) | CCGG | Hpyfe86ORF5765P |
| 5775 | exodeoxyribonuclease VII large subunit | |||
| 6525 | ACP S-malonyltransferase | |||
| 6535 | R | HpyV006IXP (98% identity) | GATC | Hpyfe86ORF6540P |
| 6540 | M | M.Hpyfe96ORF6655P (98% identity) | GATC | M.Hpyfe86ORF6540P |
| 6545 | alpha-1,2-fucosyltransferase | |||
| 6910 | sodium/proline symporter PutP | |||
| 6915 | M | M2.HpyKH22ORFOP (81% identity) | M1.Hpyfe86ORF6915P | |
| 6920 | M | M1.HpyUM038ORF1610P (98% identity) | CCTC | M2.Hpyfe86ORF6915P |
| 6925 | agmatine deiminase | |||
| 6965 | S41 family peptidase | |||
| 6970 | RM | HpyOK314ORFNP (84% identity) | Hpyfe86ORF6970P | |
| 6975 | carboxylating nicotinate-nucleotide | |||
| 7025 | copper response regulator transcription factor | |||
| 7030 | R | Hpyfe51ORF7145P (99% identity) | GAAGA | Hpyfe86ORF7035P |
| 7035 | M | M1.Hpyfe51ORF7145P (100% identity) | GAAGA | M1.Hpyfe86ORF7035P |
| 7040 | M | M2.Hpyfe101ORF6985P (99% identity) | GAAGA | M2.Hpyfe86ORF7035P |
| 7045 | site-specific DNA-methyltransferase | |||
| 7505 | 123 aa hypothetical protein | |||
| 7510 | R | HpyMA08IIP (99% identity) | TGCA | Hpyfe86ORF7515P |
| 7515 | M | M.Hpyfe85ORF7390P (98% identity) | TGCA | M.Hpyfe86ORF7515P |
| 7520 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyQ56ORFUP (96% identity) | M.Hpyfe86ORF40P | |
| 50 | R | Hpyfe104ORF40P (97% identity) | Hpyfe86ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe76ORF640P (94% identity) | Hpyfe86ORF645P | |
| 645 | M | M.Hpyfe78ORF6365P (43% identity) | M.Hpyfe86ORF645AP | |
| 650 | M | M.HpyC104ORF330P (51% identity) | M.Hpyfe86ORF645BP | |
| 655 | DNA/RNA non-specific endonuclease | |||
| 7040 | site-specific DNA-methyltransferase | |||
| 7045 | M | M.Hpyfe52ORF6880P (96% identity) | M.Hpyfe86ORF7045P | |
| 7050 | R | Hpyfe76ORF6895P (96% identity) | Hpyfe86ORF7045P | |
| 7055 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4050 | NAD(P)H-dependent oxidoreductase | |||
| 4055 | R | HpyOK304GmrSD2P (95% identity) | Hpyfe86GmrSD2P | |
| 4060 | sel1 repeat family protein | |||
| 4635 | 50S ribosomal protein L9 | |||
| 4640 | R | Hpyfe89GmrSDP (87% identity) | Hpyfe86GmrSDP | |
| 4645 | type I glutamate--ammonia ligase | |||