Helicobacter pylori Hpfe088 |
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Putative Helicobacter pylori Hpfe088 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,558,458 bp
GenBank #: CP094091
REBASE acronym: Hpyfe88
Org_num: 57333
All begin MPF86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2985 | phosphatase PAP2 family protein | |||
| 2995 | M | M.HpySG12ORF2550P (95% identity) | M.Hpyfe88ORF2995P | |
| 3000 | S | S.HpyOki128ORF4085P (98% identity) | S.Hpyfe88ORF2995P | |
| 3005 | R | Hpyfe89ORF4905P (97% identity) | Hpyfe88ORF2995P | |
| 3010 | hydroxyethylthiazole kinase | |||
| 3295 | cadmium-translocating P-type ATPase | |||
| 3300 | S | S.HpyJA108ORF2765P (70% identity) | S.Hpyfe88ORF3300P | |
| 3305 | outer membrane beta-barrel protein HofF | |||
| 4865 | type I restriction endonuclease | |||
| 4870 | R | HpyJSHR31ORF9580P (70% identity) | CTANNNNNNTC | Hpyfe88ORF4875P |
| 4875 | M | M.Hpyfe99ORF5195P (98% identity) | CTANNNNNNTC | M.Hpyfe88ORF4875P |
| 4880 | S | S.Hpyfe97ORF5205P (98% identity) | CTANNNNNNTC | S.Hpyfe88ORF4875P |
| 4890 | RNA degradosome polyphosphate kinase | |||
| 7470 | M48 family metallopeptidase | |||
| 7475 | R | Hpyfe74ORF7605P (97% identity) | CRTANNNNNNNTC | Hpyfe88ORF7480P |
| 7480 | M | M.Hpyfe81ORF7530P (97% identity) | CRTANNNNNNNTC | M.Hpyfe88ORF7480P |
| 7485 | S | S.Hpyfe97ORF7790P (98% identity) | CRTANNNNNNNTC | S.Hpyfe88ORF7480P |
| 7490 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyK051ORF7245P (85% identity) | Hpyfe88ORF50P | |
| 55 | 95 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe88ORF155P |
| 155 | M | M2.Hpy1100ORFRP (99% identity) | CCATC | M1.Hpyfe88ORF155P |
| 160 | M | M2.Hpyfe75ORF215P (100% identity) | CCATC | M2.Hpyfe88ORF155P |
| 165 | LptF/LptG family permease | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | HpyH390rORF1435P (98% identity) | CATG | Hpyfe88ORF1425P |
| 1425 | M | M.HpyJ015I (98% identity) | CATG | M.Hpyfe88ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.Hpyfe107ORF6245P (99% identity) | GCGC | M.Hpyfe88ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | HpyTW07XIVP (99% identity) | TCNNGA | Hpyfe88ORF2055P |
| 2055 | M | M.Hpyfe33ORF2040P (100% identity) | TCNNGA | M.Hpyfe88ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2705 | ATP-dependent helicase | |||
| 2710 | M | M.Hpy1829AORF9240P (98% identity) | GTNNAC | M.Hpyfe88ORF2710P |
| 2715 | R | Hpyfe35ORF2845P (96% identity) | GTNNAC | Hpyfe88ORF2710P |
| 2720 | flagellar hook protein FlgE | |||
| 3850 | outer membrane protein | |||
| 3855 | RM | Hpybs3ORFTP (77% identity) | Hpyfe88ORF3855P | |
| 3860 | (Fe-S)-binding protein | |||
| 4755 | catalase | |||
| 4760 | R | Hpyfe99ORF5080P (92% identity) | ACGT | Hpyfe88ORF4765P |
| 4765 | M | M.HpyID5ORF2330P (98% identity) | ACGT | M.Hpyfe88ORF4765P |
| 4770 | GIY-YIG nuclease family protein | |||
| 4765 | DNA cytosine methyltransferase | |||
| 4770 | R | Hpyfe49ORF4845P (100% identity) | ACNGT | Hpyfe88ORF4775P |
| 4775 | M | M.HpyQ56ORFVP (98% identity) | ACNGT | M.Hpyfe88ORF4775P |
| 4780 | translational GTPase TypA | |||
| 4785 | lipopolysaccharide heptosyltransferase family | |||
| 4790 | M | M.Hpyfe76ORF4795P (97% identity) | ATTAAT | M.Hpyfe88ORF4790P |
| 4795 | Hop family outer membrane protein HopJ/HopK | |||
| 5750 | AAA family ATPase | |||
| 5755 | M | M.HpySG13IV (99% identity) | CCGG | M.Hpyfe88ORF5755P |
| 5760 | R | HpyK044ORF6495P (97% identity) | CCGG | Hpyfe88ORF5755P |
| 5765 | exodeoxyribonuclease VII large subunit | |||
| 6165 | pseudaminic acid synthase | |||
| 6170 | R | R2.HpyJ009ORF1120P (98% identity) | R1.Hpyfe88ORF6170P | |
| 6175 | R | R1.HpyV009ORF5965P (98% identity) | R2.Hpyfe88ORF6170P | |
| 6180 | 95 aa hypothetical protein | |||
| 6565 | alpha-1,2-fucosyltransferase | |||
| 6570 | M | M.Hpy1838CIX (97% identity) | GATC | M.Hpyfe88ORF6570P |
| 6575 | R | Hpyfe22ORF6755P (96% identity) | GATC | Hpyfe88ORF6570P |
| 6585 | ACP S-malonyltransferase | |||
| 6755 | DNA cytosine methyltransferase | |||
| 6760 | R | Hpyfe49ORF6980P (98% identity) | CCTC | Hpyfe88ORF6765P |
| 6765 | M | M1.Hpyfe17ORF6815P (99% identity) | CCTC | M1.Hpyfe88ORF6765P |
| 6770 | M | M2.Hpyfe29ORF6800P (99% identity) | CCTC | M2.Hpyfe88ORF6765P |
| 6775 | agmatine deiminase | |||
| 6820 | DNA methyltransferase | |||
| 6825 | R | HpySG36VIP (96% identity) | GANTC | Hpyfe88ORF6830P |
| 6830 | M | M.Hpyfe40ORF6905P (99% identity) | GANTC | M.Hpyfe88ORF6830P |
| 6835 | 357 aa hypothetical protein | |||
| 6895 | copper response regulator transcription factor | |||
| 6900 | R | HpyJ021VP (98% identity) | GAAGA | Hpyfe88ORF6905P |
| 6905 | M | M2.HpyF75ORF37P (99% identity) | GAAGA | M1.Hpyfe88ORF6905P |
| 6910 | M | M.HpyU402V (99% identity) | GAAGA | M2.Hpyfe88ORF6905P |
| 6915 | restriction endonuclease subunit R | |||
| 7365 | DUF5343 domain-containing protein | |||
| 7370 | M | M.HpyOK304ORFKP (99% identity) | M.Hpyfe88ORF7370P | |
| 7375 | type II restriction endonuclease | |||
| 7370 | DNA cytosine methyltransferase | |||
| 7375 | R | Hpyfe95ORF7520P (99% identity) | TGCA | Hpyfe88ORF7380P |
| 7380 | M | M.Hpyfe122ORF7390P (99% identity) | TGCA | M.Hpyfe88ORF7380P |
| 7385 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyP97ORFQP (97% identity) | M.Hpyfe88ORF40P | |
| 45 | R | HpyT029ORF7135P (97% identity) | Hpyfe88ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 645 | biotin synthase | |||
| 650 | R | Hpyfe125ORF610P (96% identity) | Hpyfe88ORF655P | |
| 655 | M | M.HpyP88ORFLP (96% identity) | M.Hpyfe88ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4035 | NAD(P)H-dependent oxidoreductase | |||
| 4040 | R | HpyJA101GmrSD2P (96% identity) | Hpyfe88GmrSDP | |
| 4045 | sel1 repeat family protein | |||
| 4620 | 50S ribosomal protein L9 | |||
| 4625 | R | HpyPE105GmrSDP (84% identity) | Hpyfe88GmrSD2P | |
| 4630 | type I glutamate--ammonia ligase | |||