Helicobacter pylori Hpfe089 |
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Putative Helicobacter pylori Hpfe089 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,625,567 bp
GenBank #: CP094090
REBASE acronym: Hpyfe89
Org_num: 57334
All begin MPF90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4605 | outer membrane beta-barrel protein HofF | |||
| 4610 | S | S.Hpyfe89ORF4905P (100% identity) | GAANNNNNNNTAYG | S.Hpyfe89ORF4610P |
| 4615 | cadmium-translocating P-type ATPase | |||
| 4890 | hydroxyethylthiazole kinase | |||
| 4895 | R | Hpyfe55ORF4640P (97% identity) | GAANNNNNNNTAYG | Hpyfe89ORF4905P |
| 4900 | S | S.Hpyfe89ORF4610P (100% identity) | GAANNNNNNNTAYG | S.Hpyfe89ORF4905P |
| 4905 | M | M.HpyAR8VIII (96% identity) | GAANNNNNNNTAYG | M.Hpyfe89ORF4905P |
| 4910 | type I restriction endonuclease | |||
| 5175 | type I restriction endonuclease | |||
| 5180 | R | Hpy3ORF5480BP (96% identity) | GCANNNNNNTAA | Hpyfe89ORF5185P |
| 5185 | M | M.Hpy1100ORFGP (97% identity) | GCANNNNNNTAA | M.Hpyfe89ORF5185P |
| 5190 | S | S.Hpy155ORF5340P (97% identity) | GCANNNNNNTAA | S.Hpyfe89ORF5185P |
| 5200 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 714 aa hypothetical protein | |||
| 60 | RM | HpyJA109ORF7150P (82% identity) | Hpyfe89ORF60P | |
| 65 | transcription termination factor NusA | |||
| 270 | ComF family protein | |||
| 275 | RM | HpyCHN3ORF7135P (98% identity) | CYANNNNNNTTC | Hpyfe89ORF275P |
| 280 | S | S.Hpy200831ORF7125P (97% identity) | S.Hpyfe89ORF275P | |
| 285 | DNA polymerase I | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | R | HpyGU71CORFIP (95% identity) | CATG | Hpyfe89ORF1410P |
| 1410 | M | M.Hpyfe125ORF6085P (97% identity) | CATG | M.Hpyfe89ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyK116XII (99% identity) | GCGC | M.Hpyfe89ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe89ORF2060P |
| 2060 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe89ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.Hpyfe38ORF2685P (98% identity) | GTNNAC | M.Hpyfe89ORF2705P |
| 2710 | R | HpyJ015VIIIP (96% identity) | GTNNAC | Hpyfe89ORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 2905 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2910 | M | M.Hpyfe122ORF2915P (99% identity) | GTAC | M.Hpyfe89ORF2910P |
| 2915 | R | Hpyfe49ORF2870P (99% identity) | GTAC | Hpyfe89ORF2910P |
| 2920 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3865 | (Fe-S)-binding protein | |||
| 3870 | RM | Hpyfe71ORF3920P (93% identity) | Hpyfe89ORF3870P | |
| 3875 | outer membrane protein | |||
| 5065 | catalase | |||
| 5070 | R | Hpyfe101ORF4780P (98% identity) | ACGT | Hpyfe89ORF5075P |
| 5075 | M | M.HpyUM038ORF8675P (98% identity) | ACGT | M.Hpyfe89ORF5075P |
| 5080 | GIY-YIG nuclease family protein | |||
| 5075 | DNA cytosine methyltransferase | |||
| 5080 | R | Hpyfe97ORF5110P (99% identity) | ACNGT | Hpyfe89ORF5085P |
| 5085 | M | M.HpyJ002VIII (99% identity) | ACNGT | M.Hpyfe89ORF5085P |
| 5090 | translational GTPase TypA | |||
| 5095 | lipopolysaccharide heptosyltransferase family | |||
| 5100 | M | M.HpyMA15IV (99% identity) | ATTAAT | M.Hpyfe89ORF5100P |
| 5105 | Hop family outer membrane protein HopJ/HopK | |||
| 6035 | AAA family ATPase | |||
| 6040 | M | M.Hpyfe97ORF6090P (99% identity) | CCGG | M.Hpyfe89ORF6040P |
| 6045 | R | HpyK023IIIP (97% identity) | CCGG | Hpyfe89ORF6040P |
| 6050 | 204 aa hypothetical protein | |||
| 6050 | 204 aa hypothetical protein | |||
| 6055 | M | M.HpyP98ORFMP (99% identity) | TCGA | M.Hpyfe89ORF6055P |
| 6060 | exodeoxyribonuclease VII large subunit | |||
| 6860 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6865 | M | M.HpyH137ORF7070P (98% identity) | GATC | M.Hpyfe89ORF6865P |
| 6870 | R | HpyK034IVP (97% identity) | GATC | Hpyfe89ORF6865P |
| 6880 | ACP S-malonyltransferase | |||
| 7075 | sodium/proline symporter PutP | |||
| 7080 | R | Hpyfe49ORF6980P (96% identity) | CCTC | Hpyfe89ORF7085P |
| 7085 | M | M2.HpyF226ORFMP (98% identity) | CCTC | M1.Hpyfe89ORF7085P |
| 7090 | M | M2.Hpyfe12ORF7025P (98% identity) | CCTC | M2.Hpyfe89ORF7085P |
| 7095 | agmatine deiminase | |||
| 7140 | DNA methyltransferase | |||
| 7145 | R | Hpyfe102ORF6980P (99% identity) | GANTC | Hpyfe89ORF7150P |
| 7150 | M | M.Hpyfe11ORF7125P (100% identity) | GANTC | M.Hpyfe89ORF7150P |
| 7155 | DNA methyltransferase | |||
| 7155 | DNA methyltransferase | |||
| 7160 | RM | HpyP88ORFTP (85% identity) | Hpyfe89ORF7160P | |
| 7165 | carboxylating nicotinate-nucleotide | |||
| 7675 | DUF5343 domain-containing protein | |||
| 7680 | M | M.HpyF216ORFCP (99% identity) | M.Hpyfe89ORF7680P | |
| 7685 | type II restriction endonuclease | |||
| 7680 | DNA cytosine methyltransferase | |||
| 7685 | R | HpyMKM5ORF1481P (98% identity) | TGCA | Hpyfe89ORF7690P |
| 7690 | M | M.HpyP96ORFDP (98% identity) | TGCA | M.Hpyfe89ORF7690P |
| 7695 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyU011ORF7420P (97% identity) | M.Hpyfe89ORF40P | |
| 50 | R | Hpyfe124ORF40P (98% identity) | Hpyfe89ORF40P | |
| 55 | 714 aa hypothetical protein | |||
| 625 | type III restriction endonuclease subunit R | |||
| 630 | R | HpySG17ORF1010P (93% identity) | Hpyfe89ORF635P | |
| 635 | M | M.Hpyfe108ORF660P (95% identity) | M.Hpyfe89ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 7215 | copper response regulator transcription factor | |||
| 7220 | M | M.HpyCA1ORF4360P (97% identity) | M.Hpyfe89ORF7220P | |
| 7225 | R | HpyJSHR31ORF14020P (96% identity) | Hpyfe89ORF7220P | |
| 7230 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | type I glutamate--ammonia ligase | |||
| 2955 | R | HpyP29GmrSDP (86% identity) | Hpyfe89GmrSDP | |
| 2960 | 50S ribosomal protein L9 | |||
| 3680 | sel1 repeat family protein | |||
| 3685 | R | Hpy4105GmrSDP (96% identity) | Hpyfe89GmrSD2P | |
| 3690 | NAD(P)H-dependent oxidoreductase | |||