Helicobacter pylori Hpfe092 |
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Putative Helicobacter pylori Hpfe092 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,620,255 bp
GenBank #: CP094088
REBASE acronym: Hpyfe92
Org_num: 57335
All begin MPG40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3165 | phosphatase PAP2 family protein | |||
| 3170 | M | M.HpyKG4XVII (96% identity) | ACANNNNNNNNTAG | M.Hpyfe92ORF3170P |
| 3175 | S | S.Hpyfe92ORF3475P (100% identity) | ACANNNNNNNNTAG | S.Hpyfe92ORF3170P |
| 3180 | R | Hpyfe58ORF4885P (97% identity) | ACANNNNNNNNTAG | Hpyfe92ORF3170P |
| 3185 | hydroxyethylthiazole kinase | |||
| 3470 | cadmium-translocating P-type ATPase | |||
| 3475 | S | S.Hpyfe92ORF3170P (100% identity) | ACANNNNNNNNTAG | S.Hpyfe92ORF3475P |
| 3480 | outer membrane beta-barrel protein HofF | |||
| 7770 | M48 family metallopeptidase | |||
| 7775 | R | HpyK044ORF555P (97% identity) | CRTANNNNNNNTC | Hpyfe92ORF7780P |
| 7780 | M | M.Hpyfe110ORF8065P (97% identity) | CRTANNNNNNNTC | M.Hpyfe92ORF7780P |
| 7785 | CAAX protease | |||
| 7790 | S | S.HpyTW06ORF7265P (94% identity) | CRTANNNNNNNTC | S.Hpyfe92ORF7780P |
| 7795 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyK028ORF7070P (65% identity) | Hpyfe92ORF55P | |
| 60 | RNA-directed DNA polymerase | |||
| 140 | outer membrane protein | |||
| 145 | R | HpyT026IVP (96% identity) | CCATC | Hpyfe92ORF150P |
| 150 | M | M1.Hpyfe93ORF140P (100% identity) | CCATC | M1.Hpyfe92ORF150P |
| 155 | M | M1.HpySG05ORF7190P (99% identity) | CCATC | M2.Hpyfe92ORF150P |
| 160 | LptF/LptG family permease | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyQ55ORFTP (99% identity) | CYANNNNNNTTC | Hpyfe92ORF290P |
| 295 | S | S.HpyCOL112ORF7210P (51% identity) | S.Hpyfe92ORF290AP | |
| 300 | S | S2.HpyQ55ORFTP (94% identity) | S.Hpyfe92ORF290BP | |
| 305 | DNA polymerase I | |||
| 1600 | serine O-acetyltransferase | |||
| 1605 | R | Hpyfe2ORF1400P (95% identity) | CATG | Hpyfe92ORF1610P |
| 1610 | M | M.Hpyfe65ORF1415P (98% identity) | CATG | M.Hpyfe92ORF1610P |
| 1615 | HAD family hydrolase | |||
| 2055 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2060 | M | M.HpyJA101XI (99% identity) | GCGC | M.Hpyfe92ORF2060P |
| 2065 | 144 aa hypothetical protein | |||
| 2235 | Laminin subunit alpha-2 precursor | |||
| 2240 | R | HpyK002IXP (99% identity) | TCNNGA | Hpyfe92ORF2245P |
| 2245 | M | M.Hpyfe83ORF2030P (100% identity) | TCNNGA | M.Hpyfe92ORF2245P |
| 2250 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2895 | ATP-dependent helicase | |||
| 2900 | M | M.HpyF216ORFJP (99% identity) | GTNNAC | M.Hpyfe92ORF2900P |
| 2905 | R | Hpyfe102ORF2870P (90% identity) | GTNNAC | Hpyfe92ORF2900P |
| 2910 | flagellar hook protein FlgE | |||
| 3990 | (Fe-S)-binding protein | |||
| 3995 | RM | HpyK110ORF3020P (89% identity) | Hpyfe92ORF3995P | |
| 4000 | outer membrane protein | |||
| 4935 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4940 | R | Hpyfe72ORF4685P (100% identity) | GTAC | Hpyfe92ORF4945P |
| 4945 | M | M.Hpyfe72ORF4685P (99% identity) | GTAC | M.Hpyfe92ORF4945P |
| 4950 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5030 | catalase | |||
| 5035 | R | HpyBS30ORF4560P (99% identity) | ACGT | Hpyfe92ORF5040P |
| 5040 | M | M.HpyTW03ORF2410P (99% identity) | ACGT | M.Hpyfe92ORF5040P |
| 5045 | GIY-YIG nuclease family protein | |||
| 5040 | DNA cytosine methyltransferase | |||
| 5045 | R | Hpyfe38ORF4870P (98% identity) | ACNGT | Hpyfe92ORF5050P |
| 5050 | M | M.HpyQ56ORFVP (99% identity) | ACNGT | M.Hpyfe92ORF5050P |
| 5055 | translational GTPase TypA | |||
| 5060 | lipopolysaccharide heptosyltransferase family | |||
| 5065 | M | M.Hpyfe70ORF4910P (98% identity) | ATTAAT | M.Hpyfe92ORF5065P |
| 5070 | Hop family outer membrane protein HopJ/HopK | |||
| 5795 | 61 aa hypothetical protein | |||
| 5800 | M | M.Hpyfe17ORF5490P (99% identity) | CTNAG | M.Hpyfe92ORF5800P |
| 5805 | R | HpyJ009VIP (97% identity) | CTNAG | Hpyfe92ORF5800P |
| 5810 | polysaccharide deacetylase | |||
| 6040 | AAA family ATPase | |||
| 6045 | M | M.Hpy49503ORF13290P (99% identity) | CCGG | M.Hpyfe92ORF6045P |
| ??? | R | HpyK117IIIP (96% identity) | CCGG | Hpyfe92ORF6045P |
| 6055 | 204 aa hypothetical protein | |||
| 6055 | 204 aa hypothetical protein | |||
| 6060 | M | M.Hpyfe85ORF5795P (99% identity) | TCGA | M.Hpyfe92ORF6060P |
| 6065 | exodeoxyribonuclease VII large subunit | |||
| 6470 | pseudaminic acid synthase | |||
| 6475 | R | R2.HpyK042ORF940P (98% identity) | R1.Hpyfe92ORF6475P | |
| 6480 | R | R1.Hpyfe64ORF1930P (66% identity) | R2.Hpyfe92ORF6475BP | |
| 6485 | transposase | |||
| 6490 | IS607-like element IS607 family transposase | |||
| 6495 | R | R1.HpyV009ORF5965P (32% identity) | R2.Hpyfe92ORF6475AP | |
| 6500 | 86 aa hypothetical protein | |||
| 6895 | alpha-1,2-fucosyltransferase | |||
| 6900 | M | M.HpyK115VII (97% identity) | GATC | M.Hpyfe92ORF6900P |
| 6905 | HTH domain-containing protein | |||
| 7055 | sodium/proline symporter PutP | |||
| 7060 | R | Hpyfe49ORF6980P (96% identity) | CCTC | Hpyfe92ORF7065P |
| 7065 | M | M2.HpyK041VIIP (99% identity) | CCTC | M1.Hpyfe92ORF7065P |
| 7070 | M | M1.HpyU425V (99% identity) | CCTC | M2.Hpyfe92ORF7065P |
| 7075 | agmatine deiminase | |||
| 7120 | DNA methyltransferase | |||
| 7125 | R | Hpyfe72ORF6940P (51% identity) | GANTC | Hpyfe92ORF7140P |
| 7130 | 245 aa hypothetical protein | |||
| 7135 | 56 aa hypothetical protein | |||
| 7140 | M | M.Hpys8ORF15440P (40% identity) | GANTC | M.Hpyfe92ORF7140P |
| 7145 | DNA methyltransferase | |||
| 7140 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyPO18ORF6485P (86% identity) | Hpyfe92ORF7145P | |
| 7160 | carboxylating nicotinate-nucleotide | |||
| 7680 | 78 aa hypothetical protein | |||
| 7685 | R | HpyF75ORF1530P (98% identity) | TGCA | Hpyfe92ORF7690P |
| 7690 | M | M.Hpyfe93ORF7595P (99% identity) | TGCA | M.Hpyfe92ORF7690P |
| 7695 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe74ORF40P (96% identity) | M.Hpyfe92ORF40P | |
| 50 | R | Hpyfe85ORF40P (98% identity) | Hpyfe92ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 640 | biotin synthase | |||
| 645 | R | HpySG18XVIIIP (96% identity) | Hpyfe92ORF650P | |
| 650 | M | M.Hpyfe5ORF645P (96% identity) | M.Hpyfe92ORF650P | |
| 655 | ABC transporter ATP-binding protein/permease | |||
| 7210 | copper response regulator transcription factor | |||
| 7215 | M | M.Hpyfe123ORF7160P (97% identity) | M.Hpyfe92ORF7215P | |
| 7220 | R | HpyP001ORF6665P (88% identity) | Hpyfe92ORF7215P | |
| 7225 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4310 | NAD(P)H-dependent oxidoreductase | |||
| 4315 | R | Hpyfe29GmrSD2P (97% identity) | Hpyfe92GmrSDP | |
| 4320 | sel1 repeat family protein | |||
| 4895 | 50S ribosomal protein L9 | |||
| 4900 | R | HpySG06GmrSDP (91% identity) | Hpyfe92GmrSD2P | |
| 4905 | type I glutamate--ammonia ligase | |||