Helicobacter pylori Hpfe093 |
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Putative Helicobacter pylori Hpfe093 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,604,124 bp
GenBank #: CP094087
REBASE acronym: Hpyfe93
Org_num: 57336
All begin MPG15_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4695 | hydroxyethylthiazole kinase | |||
| 4700 | R | Hpyfe15ORF3000P (96% identity) | Hpyfe93ORF4710P | |
| 4705 | S | S.HpyTW06II (84% identity) | S.Hpyfe93ORF4710P | |
| 4710 | M | M.HpyCHN4IX (96% identity) | M.Hpyfe93ORF4710P | |
| 4715 | type I restriction endonuclease | |||
| 7675 | M48 family metallopeptidase | |||
| 7680 | R | HpyMA08VP (96% identity) | Hpyfe93ORF7685P | |
| 7685 | M | M.HpyUM023ORF1210P (95% identity) | M.Hpyfe93ORF7685P | |
| 7690 | S | S.HpySG06ORF7335P (97% identity) | S.Hpyfe93ORF7685P | |
| 7695 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 718 aa hypothetical protein | |||
| 60 | RM | HpyMA12XV (92% identity) | Hpyfe93ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyT026IVP (98% identity) | CCATC | Hpyfe93ORF140P |
| 140 | M | M1.Hpyfe92ORF150P (100% identity) | CCATC | M1.Hpyfe93ORF140P |
| 145 | M | M1.HpyT026IV (99% identity) | CCATC | M2.Hpyfe93ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpyfe24ORF270P (99% identity) | CYANNNNNNTTC | Hpyfe93ORF280P |
| 285 | S | S.HpyU401ORF7205P (93% identity) | S.Hpyfe93ORF280P | |
| 290 | DNA polymerase I | |||
| 550 | UDP-N-acetylmuramate dehydrogenase | |||
| 555 | R | HpyTW03VIIP (98% identity) | GAATTC | Hpyfe93ORF560P |
| 560 | M | M.HpyV001VI (99% identity) | GAATTC | M.Hpyfe93ORF560P |
| 565 | glycosyltransferase family 8 protein | |||
| 1385 | serine O-acetyltransferase | |||
| 1390 | R | Hpyfe27ORF1490P (94% identity) | CATG | Hpyfe93ORF1395P |
| 1395 | M | M.HpySG02I (98% identity) | CATG | M.Hpyfe93ORF1395P |
| 1400 | HAD family hydrolase | |||
| 1570 | purine-nucleoside phosphorylase | |||
| 1575 | R | HpySW26VIIP (100% identity) | TCNGA | Hpyfe93ORF1580P |
| 1580 | M | M.HpyCOL209XII (98% identity) | TCNGA | M.Hpyfe93ORF1580P |
| 1585 | Hop family adhesin HopQ | |||
| 1850 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1855 | M | M.HpyJA101XI (99% identity) | GCGC | M.Hpyfe93ORF1855P |
| 1860 | 144 aa hypothetical protein | |||
| 2040 | Laminin subunit alpha-2 precursor | |||
| 2045 | R | Hpyfe7ORF2035P (100% identity) | TCNNGA | Hpyfe93ORF2050P |
| 2050 | M | M.HpySG14XI (99% identity) | TCNNGA | M.Hpyfe93ORF2050P |
| 2055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2825 | ATP-dependent helicase | |||
| 2830 | M | M.Hpyfe8ORF4225P (98% identity) | GTNNAC | M.Hpyfe93ORF2830P |
| 2835 | R | HpyK004XIP (95% identity) | GTNNAC | Hpyfe93ORF2830P |
| 2840 | flagellar hook protein FlgE | |||
| 3020 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3025 | M | M.Hpyfe8ORF4015P (99% identity) | GTAC | M.Hpyfe93ORF3025P |
| 3030 | R | HpyMKM6ORF506P (98% identity) | GTAC | Hpyfe93ORF3025P |
| 3035 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3890 | outer membrane protein | |||
| 3895 | RM | Hpyfe5ORF4050P (93% identity) | Hpyfe93ORF3895P | |
| 3900 | (Fe-S)-binding protein | |||
| 4875 | catalase | |||
| 4880 | R | Hpyfe103ORF4775P (98% identity) | ACGT | Hpyfe93ORF4885P |
| 4885 | M | M.HpyMA06ORF4145P (98% identity) | ACGT | M.Hpyfe93ORF4885P |
| 4890 | GIY-YIG nuclease family protein | |||
| 4885 | DNA cytosine methyltransferase | |||
| 4890 | R | Hpybs3ORFQP (100% identity) | ACNGT | Hpyfe93ORF4895P |
| 4895 | M | M.HpyCH4III (99% identity) | ACNGT | M.Hpyfe93ORF4895P |
| 4900 | translational GTPase TypA | |||
| 4905 | lipopolysaccharide heptosyltransferase family | |||
| 4910 | M | M.Hpyfe40ORF4805P (98% identity) | ATTAAT | M.Hpyfe93ORF4910P |
| 4915 | Hop family outer membrane protein HopJ/HopK | |||
| 5420 | group I intron-associated PD-(D/E)XK | |||
| 5425 | M | M.HpySG36ORF4875P (99% identity) | GCNGC | M.Hpyfe93ORF5425P |
| 5430 | translation elongation factor 4 | |||
| 5625 | 128 aa hypothetical protein | |||
| 5630 | M | M.HpyH1V (99% identity) | CTNAG | M.Hpyfe93ORF5630P |
| 5635 | R | Hpyfe112ORF5665P (98% identity) | CTNAG | Hpyfe93ORF5630P |
| 5640 | polysaccharide deacetylase | |||
| 5870 | AAA family ATPase | |||
| 5875 | M | M.Hpyfe85ORF5780P (100% identity) | CCGG | M.Hpyfe93ORF5875P |
| 5880 | R | Hpyfe63ORF5755P (97% identity) | CCGG | Hpyfe93ORF5875P |
| 5885 | 204 aa hypothetical protein | |||
| 5885 | 204 aa hypothetical protein | |||
| 5890 | M | M.Hpyfe49ORF5830P (100% identity) | TCGA | M.Hpyfe93ORF5890P |
| 5895 | exodeoxyribonuclease VII large subunit | |||
| 6300 | pseudaminic acid synthase | |||
| 6305 | R | R2.Hpyfe100ORF6200P (98% identity) | R2.Hpyfe93ORF6315P | |
| 6310 | R | R1.HpyF209ORF215P (99% identity) | R1.Hpyfe93ORF6315P | |
| 6315 | M | M.Hpyfe2ORF6380P (99% identity) | M.Hpyfe93ORF6315P | |
| 6320 | elongation factor P | |||
| 6580 | HTH domain-containing protein | |||
| 6585 | M | M.HpyTW24XII (96% identity) | GATC | M.Hpyfe93ORF6585P |
| 6590 | alpha-1,2-fucosyltransferase | |||
| 6630 | glycosyltransferase | |||
| 6635 | R | Hpy928ORFKP (100% identity) | Hpyfe93ORF6640P | |
| 6640 | M | M.Hpyfe81ORF1020P (99% identity) | M.Hpyfe93ORF6640P | |
| 6645 | methyl-accepting chemotaxis protein TlpB | |||
| 6970 | sodium/proline symporter PutP | |||
| 6975 | M | M1.Hpyfe52ORF6755P (98% identity) | M1.Hpyfe93ORF6975P | |
| 6980 | M | M1.HpyF210ORF58P (98% identity) | CCTC | M2.Hpyfe93ORF6975P |
| 6985 | agmatine deiminase | |||
| 7030 | DNA methyltransferase | |||
| 7035 | R | Hpyfe75ORF7180P (96% identity) | GANTC | Hpyfe93ORF7040P |
| 7040 | M | M.Hpyfe40ORF6905P (99% identity) | GANTC | M.Hpyfe93ORF7040P |
| 7045 | N-6 DNA methylase | |||
| 7040 | site-specific DNA-methyltransferase | |||
| 7045 | RM | HpyK262ORF7560P (88% identity) | Hpyfe93ORF7045P | |
| 7050 | carboxylating nicotinate-nucleotide | |||
| 7100 | copper response regulator transcription factor | |||
| 7105 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpyfe93ORF7110P |
| 7110 | M | M2.HpyK118VIII (99% identity) | GAAGA | M1.Hpyfe93ORF7110P |
| 7115 | M | M2.Hpyfe78ORF7125P (99% identity) | GAAGA | M2.Hpyfe93ORF7110P |
| 7120 | EcoRV family type II restriction endonuclease | |||
| 7585 | 174 aa hypothetical protein | |||
| 7590 | R | HpyMM04XVP (97% identity) | TGCA | Hpyfe93ORF7595P |
| 7595 | M | M.Hpyfe96ORF7485P (99% identity) | TGCA | M.Hpyfe93ORF7595P |
| 7600 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe115ORF40P (97% identity) | M.Hpyfe93ORF40P | |
| 50 | R | Hpyfe112ORF40P (97% identity) | Hpyfe93ORF40P | |
| 55 | 718 aa hypothetical protein | |||
| 615 | biotin synthase | |||
| 620 | R | HpySG19ORF6625P (94% identity) | Hpyfe93ORF625P | |
| 625 | M | M.Hpyfe83ORF605P (94% identity) | M.Hpyfe93ORF625P | |
| 630 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3065 | type I glutamate--ammonia ligase | |||
| 3070 | R | HpyJ015GmrSDP (81% identity) | Hpyfe93GmrSD2P | |
| 3075 | 50S ribosomal protein L9 | |||
| 3650 | sel1 repeat family protein | |||
| 3655 | R | Hpyfe112GmrSDP (95% identity) | Hpyfe93GmrSDP | |
| 3660 | NAD(P)H-dependent oxidoreductase | |||