Helicobacter pylori Hpfe095 |
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Putative Helicobacter pylori Hpfe095 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,598,616 bp
GenBank #: CP094085
REBASE acronym: Hpyfe95
Org_num: 57337
All begin MPG64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4285 | outer membrane beta-barrel protein HofF | |||
| 4290 | S | S.Hpyfe3ORF3005P (95% identity) | S.Hpyfe95ORF4290P | |
| 4295 | cadmium-translocating P-type ATPase | |||
| 4585 | hydroxyethylthiazole kinase | |||
| 4590 | R | HpyK028ORF4135P (97% identity) | Hpyfe95ORF4600P | |
| 4595 | S | S.HpyCOL310ORF3555P (93% identity) | S.Hpyfe95ORF4600P | |
| 4600 | M | M.Hpyfe49ORF4670P (96% identity) | M.Hpyfe95ORF4600P | |
| 4605 | phosphatase PAP2 family protein | |||
| 7615 | M48 family metallopeptidase | |||
| 7620 | R | Hpyfe23ORF7685P (96% identity) | Hpyfe95ORF7625P | |
| 7625 | M | M.Hpy23ORF1426P (97% identity) | M.Hpyfe95ORF7625P | |
| 7630 | CAAX protease | |||
| 7635 | S | S.HpyT016ORF7480P (95% identity) | S.Hpyfe95ORF7625P | |
| 7640 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyID2ORF6995P (84% identity) | Hpyfe95ORF55P | |
| 60 | 95 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | HpyMKF8ORF1415P (95% identity) | CCATC | Hpyfe95ORF155P |
| 155 | M | M1.Hpyfe55ORF155P (99% identity) | CCATC | M1.Hpyfe95ORF155P |
| 160 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.Hpyfe95ORF155P |
| 165 | LptF/LptG family permease | |||
| 295 | VRR-NUC domain-containing protein | |||
| 300 | R | HpysHP34ORF1435P (99% identity) | Hpyfe95ORF305P | |
| 305 | M | M.HpyGE18ORF7115P (100% identity) | M.Hpyfe95ORF305P | |
| 310 | S | S2.HpyK012ORF6900P (93% identity) | S1.Hpyfe95ORF305P | |
| 315 | S | S.HpyUM032XIII-mut1 (43% identity) | S2.Hpyfe95ORF305P | |
| 320 | DNA polymerase I | |||
| 365 | addiction module antidote protein | |||
| 370 | M | M1.Hpyfe56ORF355P (99% identity) | M1.Hpyfe95ORF370P | |
| 375 | M | M2.Hpyfe51ORF330P (99% identity) | M2.Hpyfe95ORF370P | |
| 380 | R | Hpyfe56ORF355P (99% identity) | Hpyfe95ORF370P | |
| 385 | cytochrome-c peroxidase | |||
| 840 | agmatine/peptidylarginine deiminase | |||
| 845 | M | M2.Hpyfe103ORF6940P (97% identity) | CCTC | M1.Hpyfe95ORF845P |
| 850 | M | M1.Hpyfe37ORF6880P (97% identity) | M2.Hpyfe95ORF845P | |
| 855 | sodium/proline symporter PutP | |||
| 1015 | ACP S-malonyltransferase | |||
| 1025 | R | Hpyfe96ORF6655P (94% identity) | GATC | Hpyfe95ORF1030P |
| 1030 | M | M.HpyUM023ORF2365P (97% identity) | GATC | M.Hpyfe95ORF1030P |
| 1035 | alpha-1,2-fucosyltransferase | |||
| 1820 | exodeoxyribonuclease VII large subunit | |||
| 1825 | R | Hpyfe126ORF5855P (97% identity) | CCGG | Hpyfe95ORF1830P |
| 1830 | M | M.HpyOK316ORFUP (99% identity) | CCGG | M.Hpyfe95ORF1830P |
| 1835 | AAA family ATPase | |||
| 2065 | polysaccharide deacetylase | |||
| 2070 | R | HpyK51ORF313P (93% identity) | CTNAG | Hpyfe95ORF2075P |
| 2075 | M | M.Hpyfe97ORF5845P (97% identity) | CTNAG | M.Hpyfe95ORF2075P |
| 2080 | 125 aa hypothetical protein | |||
| 2805 | Hop family outer membrane protein HopJ/HopK | |||
| 2810 | M | M.HpyK024II (97% identity) | ATTAAT | M.Hpyfe95ORF2810P |
| 2815 | lipopolysaccharide heptosyltransferase family | |||
| 2820 | translational GTPase TypA | |||
| 2825 | M | M.HpyJ002VIII (99% identity) | ACNGT | M.Hpyfe95ORF2825P |
| 2830 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | Hpyfe95ORF2825P |
| 2835 | catalase | |||
| 2920 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2925 | M | M.HpyKG7VII (97% identity) | GTAC | M.Hpyfe95ORF2925P |
| 2930 | R | Hpyfe93ORF3025P (97% identity) | GTAC | Hpyfe95ORF2925P |
| 2935 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3730 | (Fe-S)-binding protein | |||
| 3735 | RM | Hpyfe61ORF4005P (90% identity) | Hpyfe95ORF3735P | |
| 3740 | outer membrane protein | |||
| 4870 | flagellar hook protein FlgE | |||
| 4875 | R | Hpyfe79ORF2705P (93% identity) | GTNNAC | Hpyfe95ORF4880P |
| 4880 | M | M.Hpyfe49ORF2670P (95% identity) | GTNNAC | M.Hpyfe95ORF4880P |
| 4885 | ATP-dependent helicase | |||
| 5535 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5540 | M | M.Hpyfe5ORF2080P (99% identity) | TCNNGA | M.Hpyfe95ORF5540P |
| 5545 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe95ORF5540P |
| 5550 | Laminin subunit alpha-2 precursor | |||
| 5715 | 144 aa hypothetical protein | |||
| 5720 | M | M.HpyF94ORF182P (99% identity) | GCGC | M.Hpyfe95ORF5720P |
| 5725 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6170 | HAD family hydrolase | |||
| 6175 | M | M.HpyTW23I (99% identity) | CATG | M.Hpyfe95ORF6175P |
| 6180 | R | HpyH390rORF1435P (96% identity) | CATG | Hpyfe95ORF6175P |
| 6185 | serine O-acetyltransferase | |||
| 6890 | DNA methyltransferase | |||
| 6895 | R | Hpys8ORF15440P (96% identity) | GANTC | Hpyfe95ORF6900P |
| 6900 | M | M.HpyJ013I (100% identity) | GANTC | M.Hpyfe95ORF6900P |
| 6905 | N-6 DNA methylase | |||
| 6900 | site-specific DNA-methyltransferase | |||
| 6905 | RM | HpyK027ORF275P (90% identity) | Hpyfe95ORF6905P | |
| 6910 | tyrosine-type recombinase/integrase | |||
| 7510 | 146 aa hypothetical protein | |||
| 7515 | R | HpyOK312ORFGP (99% identity) | TGCA | Hpyfe95ORF7520P |
| 7520 | M | M.Hpyfe4ORF7320P (98% identity) | TGCA | M.Hpyfe95ORF7520P |
| 7525 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW21XVI (97% identity) | GACC | M.Hpyfe95ORF40P |
| 50 | R | Hpyfe113ORF2950P (97% identity) | GACC | Hpyfe95ORF40P |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 700 | type III restriction endonuclease subunit R | |||
| 705 | R | HpyT029ORF6570P (88% identity) | Hpyfe95ORF710P | |
| 710 | M | M.HpyTW06ORF6590P (96% identity) | M.Hpyfe95ORF710P | |
| 715 | ABC transporter ATP-binding protein/permease | |||
| 7060 | copper response regulator transcription factor | |||
| 7065 | M | M.Hpyfe102ORF7065P (81% identity) | M.Hpyfe95ORF7065P | |
| 7070 | R | Hpyfe51ORF7155P (95% identity) | Hpyfe95ORF7065P | |
| 7075 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | type I glutamate--ammonia ligase | |||
| 2970 | R | Hpyfe65GmrSDP (89% identity) | Hpyfe95GmrSDP | |
| 2975 | 50S ribosomal protein L9 | |||
| 3545 | sel1 repeat family protein | |||
| 3550 | R | HpyK041GmrSD2P (93% identity) | Hpyfe95GmrSD2P | |
| 3555 | NAD(P)H-dependent oxidoreductase | |||