Helicobacter pylori Hpfe096 |
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Putative Helicobacter pylori Hpfe096 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,560,974 bp
GenBank #: CP094083
REBASE acronym: Hpyfe96
Org_num: 57338
All begin MPG55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3020 | phosphatase PAP2 family protein | |||
| 3030 | M | M.HpySG33III (97% identity) | GRNAANNNNNNNTAG | M.Hpyfe96ORF3030P |
| 3035 | S | S.HpyID3XV (65% identity) | GRNAANNNNNNNTAG | S.Hpyfe96ORF3030P |
| 3040 | R | Hpyfe56ORF3060P (97% identity) | GRNAANNNNNNNTAG | Hpyfe96ORF3030P |
| 3045 | hydroxyethylthiazole kinase | |||
| 3320 | cadmium-translocating P-type ATPase | |||
| 3325 | S | S.HpyU431ORF2610P (96% identity) | CCANNNNNNRTC | S.Hpyfe96ORF3325P |
| 3330 | outer membrane beta-barrel protein HofF | |||
| 4930 | motility associated factor glycosyltransferase | |||
| 4935 | R | HpyC105ORF3265P (93% identity) | CAGNNNNNTTA | Hpyfe96ORF4940P |
| 4940 | M | M.HpyK045ORF4015P (97% identity) | CAGNNNNNTTA | M.Hpyfe96ORF4940P |
| 4945 | S | S.HpyU201ORF2120P (98% identity) | CAGNNNNNTTA | S.Hpyfe96ORF4940P |
| 4955 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyOK313ORFHP (89% identity) | Hpyfe96ORF50P | |
| 55 | 86 aa hypothetical protein | |||
| 305 | ComF family protein | |||
| 310 | RM | Hpyfe72ORF280P (98% identity) | CYANNNNNNTTC | Hpyfe96ORF310P |
| 315 | S | S.HpyK023ORF6950P (51% identity) | S1.Hpyfe96ORF310P | |
| 320 | S | S2.HpyOK36ORFNP (93% identity) | S2.Hpyfe96ORF310P | |
| 325 | DNA polymerase I | |||
| 1465 | serine O-acetyltransferase | |||
| 1470 | R | HpyGU1CORFTP (89% identity) | CATG | Hpyfe96ORF1475P |
| 1475 | M | M.Hpyfe2ORF1400P (100% identity) | CATG | M.Hpyfe96ORF1475P |
| 1480 | HAD family hydrolase | |||
| 1920 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1925 | M | M.HpyUM111ORF6900P (98% identity) | GCGC | M.Hpyfe96ORF1925P |
| 1930 | 144 aa hypothetical protein | |||
| 2100 | Laminin subunit alpha-2 precursor | |||
| 2105 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe96ORF2110P |
| 2110 | M | M.HpyP98ORFEP (99% identity) | TCNNGA | M.Hpyfe96ORF2110P |
| 2115 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2745 | ATP-dependent helicase | |||
| 2750 | M | M.HpySG08XIII (97% identity) | GTNNAC | M.Hpyfe96ORF2750P |
| 2755 | R | Hpyfe6ORF2680P (96% identity) | GTNNAC | Hpyfe96ORF2750P |
| 2760 | flagellar hook protein FlgE | |||
| 3900 | outer membrane protein | |||
| 3905 | RM | HpyTW21ORF3270P (92% identity) | Hpyfe96ORF3905P | |
| 3910 | (Fe-S)-binding protein | |||
| 4725 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4730 | R | Hpy38ORF899P (98% identity) | GTAC | Hpyfe96ORF4735P |
| 4735 | M | M.Hpyfe122ORF2915P (99% identity) | GTAC | M.Hpyfe96ORF4735P |
| 4740 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4825 | catalase | |||
| 4830 | R | HpySG13ORF2310P (99% identity) | ACGT | Hpyfe96ORF4835P |
| 4835 | M | M.Hpyfe113ORF5855P (100% identity) | ACGT | M.Hpyfe96ORF4835P |
| 4840 | GIY-YIG nuclease family protein | |||
| 4835 | DNA cytosine methyltransferase | |||
| 4840 | R | HpyBR9IIP (99% identity) | ACNGT | Hpyfe96ORF4845P |
| 4845 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe96ORF4845P |
| 4850 | translational GTPase TypA | |||
| 4855 | lipopolysaccharide heptosyltransferase family | |||
| 4860 | M | M.Hpyfe97ORF5125P (98% identity) | ATTAAT | M.Hpyfe96ORF4860P |
| 4865 | Hop family outer membrane protein HopJ/HopK | |||
| 5385 | group I intron-associated PD-(D/E)XK | |||
| 5390 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpyfe96ORF5390P |
| 5395 | translation elongation factor 4 | |||
| 5825 | AAA family ATPase | |||
| 5830 | M | M.HpyNP09V (99% identity) | CCGG | M.Hpyfe96ORF5830P |
| 5835 | R | HpyPF16IVP (91% identity) | CCGG | Hpyfe96ORF5830P |
| 5840 | exodeoxyribonuclease VII large subunit | |||
| 6650 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6655 | M | M.Hpy417ORF440P (98% identity) | GATC | M.Hpyfe96ORF6655P |
| 6660 | R | HpyK93ORF6805P (96% identity) | GATC | Hpyfe96ORF6655P |
| 6670 | ACP S-malonyltransferase | |||
| 6850 | sodium/proline symporter PutP | |||
| 6855 | M | M.HpyT029V (99% identity) | CCTTC | M.Hpyfe96ORF6855P |
| ??? | R | Hpyfe24ORF6940P (98% identity) | CCTTC | Hpyfe96ORF6855P |
| 6870 | restriction endonuclease | |||
| 6865 | iron permease | |||
| 6870 | R | Hpyfe63ORF7595P (99% identity) | GTSAC | Hpyfe96ORF6875P |
| 6875 | M | M.Hpyfe55ORF6800P (100% identity) | GTSAC | M.Hpyfe96ORF6875P |
| 6880 | HNH endonuclease | |||
| 6875 | site-specific DNA-methyltransferase | |||
| 6880 | R | Hpyfe12ORF7025P (97% identity) | CCTC | Hpyfe96ORF6885P |
| 6885 | M | M1.Hpyfe24ORF6965P (99% identity) | CCTC | M1.Hpyfe96ORF6885P |
| 6890 | M | M1.HpyK052V (99% identity) | CCTC | M2.Hpyfe96ORF6885P |
| 6895 | outer membrane protein | |||
| 6935 | S41 family peptidase | |||
| ??? | RM | HpySG13ORF280P (94% identity) | Hpyfe96ORF6940P | |
| 6950 | carboxylating nicotinate-nucleotide | |||
| 7475 | 61 aa hypothetical protein | |||
| 7480 | R | Hpyfe5ORF7545P (99% identity) | TGCA | Hpyfe96ORF7485P |
| 7485 | M | M.Hpyfe93ORF7595P (99% identity) | TGCA | M.Hpyfe96ORF7485P |
| 7490 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyQ56ORFUP (96% identity) | M.Hpyfe96ORF40P | |
| 45 | R | HpyMA10ORF7285P (96% identity) | Hpyfe96ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 665 | biotin synthase | |||
| 670 | R | Hpy1829AORF13250P (92% identity) | Hpyfe96ORF675P | |
| 675 | M | M.HpyK111ORF6740P (96% identity) | M.Hpyfe96ORF675P | |
| 680 | IS607 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4085 | NAD(P)H-dependent oxidoreductase | |||
| 4090 | R | HpyP82GmrSD2P (95% identity) | Hpyfe96GmrSD2P | |
| 4095 | sel1 repeat family protein | |||
| 4685 | 50S ribosomal protein L9 | |||
| 4690 | R | Hpyfe58GmrSDP (88% identity) | Hpyfe96GmrSDP | |
| 4695 | type I glutamate--ammonia ligase | |||