Helicobacter pylori Hpfe097 |
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Putative Helicobacter pylori Hpfe097 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,640,211 bp
GenBank #: CP094082
REBASE acronym: Hpyfe97
Org_num: 57339
All begin MPG63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4625 | outer membrane beta-barrel protein HofF | |||
| 4630 | S | S.HpyME28ORF3780P (94% identity) | S.Hpyfe97ORF4630P | |
| 4635 | cadmium-translocating P-type ATPase | |||
| 5195 | motility associated factor glycosyltransferase | |||
| 5200 | R | Hpyfe96ORF4940P (96% identity) | CTANNNNNNTC | Hpyfe97ORF5205P |
| 5205 | M | M.HpySG17XII (97% identity) | CTANNNNNNTC | M.Hpyfe97ORF5205P |
| 5210 | S | S.HpySG15ORF2445P (99% identity) | CTANNNNNNTC | S.Hpyfe97ORF5205P |
| 5220 | RNA degradosome polyphosphate kinase | |||
| 7780 | M48 family metallopeptidase | |||
| 7785 | R | Hpyfe23ORF7685P (97% identity) | CRTANNNNNNNTC | Hpyfe97ORF7790P |
| 7790 | M | M.Hpyfe123ORF7730P (98% identity) | CRTANNNNNNNTC | M.Hpyfe97ORF7790P |
| 7795 | S | S.Hpyfe88ORF7480P (98% identity) | CRTANNNNNNNTC | S.Hpyfe97ORF7790P |
| 7800 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyK025XV (91% identity) | Hpyfe97ORF55P | |
| 60 | 179 aa hypothetical protein | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyK008ORF6935P (98% identity) | CYANNNNNNTTC | Hpyfe97ORF290P |
| 295 | S | S.HpySW16ORF7020P (48% identity) | S1.Hpyfe97ORF290P | |
| 300 | S | S2.Hpy4105ORFUP (93% identity) | S2.Hpyfe97ORF290P | |
| 305 | DNA polymerase I | |||
| 580 | UDP-N-acetylmuramate dehydrogenase | |||
| 585 | M | M.HpyMA06ORF6885P (99% identity) | M.Hpyfe97ORF585P | |
| 590 | R | HpyOK316ORFEP (100% identity) | Hpyfe97ORF585P | |
| 595 | glycosyltransferase family 8 protein | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | HpyK051IP (94% identity) | CATG | Hpyfe97ORF1435P |
| 1435 | M | M.HpyML1ORFB1P (99% identity) | CATG | M.Hpyfe97ORF1435P |
| 1440 | HAD family hydrolase | |||
| 2040 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2045 | M | M.Hpyfe24ORF2020P (98% identity) | GCGC | M.Hpyfe97ORF2045P |
| 2050 | 144 aa hypothetical protein | |||
| 2220 | Laminin subunit alpha-2 precursor | |||
| 2225 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | Hpyfe97ORF2230P |
| 2230 | M | M.HpyJ013IV (99% identity) | TCNNGA | M.Hpyfe97ORF2230P |
| 2235 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2875 | ATP-dependent helicase | |||
| 2880 | M | M.Hpy274ORF1066P (97% identity) | GTNNAC | M.Hpyfe97ORF2880P |
| 2885 | R | Hpyfe6ORF2680P (99% identity) | GTNNAC | Hpyfe97ORF2880P |
| 2890 | flagellar hook protein FlgE | |||
| 3085 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3090 | M | M.Hpyfe8ORF4015P (99% identity) | GTAC | M.Hpyfe97ORF3090P |
| 3095 | R | HpyID2VIP (98% identity) | GTAC | Hpyfe97ORF3090P |
| 3100 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4930 | type I restriction-modification system subunit | |||
| 4935 | M | M.Hpyfe85ORF2990P (99% identity) | GGCC | M.Hpyfe97ORF4935P |
| 4940 | R | Hpyfe102ORF3140P (99% identity) | GGCC | Hpyfe97ORF4935P |
| 4945 | phosphatase PAP2 family protein | |||
| 5090 | catalase | |||
| 5095 | R | Hpyfe79ORF4780P (99% identity) | ACGT | Hpyfe97ORF5100P |
| 5100 | M | M.Hpy3ORF5720P (99% identity) | ACGT | M.Hpyfe97ORF5100P |
| 5105 | GIY-YIG nuclease family protein | |||
| 5100 | DNA cytosine methyltransferase | |||
| 5105 | R | Hpyfe36ORF4810P (100% identity) | ACNGT | Hpyfe97ORF5110P |
| 5110 | M | M.HpyK024ORF2365P (96% identity) | ACNGT | M.Hpyfe97ORF5110P |
| 5115 | translational GTPase TypA | |||
| 5120 | lipopolysaccharide heptosyltransferase family | |||
| 5125 | M | M.Hpyfe96ORF4860P (98% identity) | ATTAAT | M.Hpyfe97ORF5125P |
| 5130 | Hop family outer membrane protein HopJ/HopK | |||
| 5840 | 125 aa hypothetical protein | |||
| 5845 | M | M.HpyP98ORFLP (99% identity) | CTNAG | M.Hpyfe97ORF5845P |
| 5850 | R | Hpyfe80ORF5505P (97% identity) | CTNAG | Hpyfe97ORF5845P |
| 5855 | polysaccharide deacetylase | |||
| 6085 | AAA family ATPase | |||
| 6090 | M | M.Hpyfe86ORF5765P (100% identity) | CCGG | M.Hpyfe97ORF6090P |
| 6095 | R | HpyJSHR6ORF11280P (98% identity) | CCGG | Hpyfe97ORF6090P |
| 6100 | 204 aa hypothetical protein | |||
| 6100 | 204 aa hypothetical protein | |||
| 6105 | M | M.HpyJP26II (98% identity) | TCGA | M.Hpyfe97ORF6105P |
| 6110 | exodeoxyribonuclease VII large subunit | |||
| 6910 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6915 | M | M.HpyPE121IX (96% identity) | GATC | M.Hpyfe97ORF6915P |
| 6920 | R | Hpyfe65ORF6580P (92% identity) | GATC | Hpyfe97ORF6915P |
| 6930 | ACP S-malonyltransferase | |||
| 7090 | sodium/proline symporter PutP | |||
| 7095 | M | M2.HpyC208ORF350P (99% identity) | M1.Hpyfe97ORF7095P | |
| 7100 | M | M2.Hpyfe127ORF6960P (97% identity) | CCTC | M2.Hpyfe97ORF7095P |
| 7105 | agmatine deiminase | |||
| 7145 | S41 family peptidase | |||
| 7150 | RM | HpyOK303ORFMP (91% identity) | Hpyfe97ORF7150P | |
| 7155 | carboxylating nicotinate-nucleotide | |||
| 7205 | copper response regulator transcription factor | |||
| 7210 | R | Hpybs3ORFLP (83% identity) | Hpyfe97ORF7210P | |
| 7215 | EcoRV family type II restriction endonuclease | |||
| 7210 | restriction endonuclease subunit R | |||
| 7215 | R | HpySG33ORF370P (99% identity) | GATATC | Hpyfe97ORF7220P |
| 7220 | M | M.HpyTW24XVII (97% identity) | GATATC | M.Hpyfe97ORF7220P |
| 7225 | site-specific DNA-methyltransferase | |||
| 7670 | DUF5343 domain-containing protein | |||
| 7675 | M | M.HpyOK304ORFKP (99% identity) | M.Hpyfe97ORF7675P | |
| 7680 | type II restriction endonuclease | |||
| 7675 | DNA cytosine methyltransferase | |||
| 7680 | R | Hpyfe77ORF7700P (99% identity) | TGCA | Hpyfe97ORF7685P |
| 7685 | M | M.HpyV003X (97% identity) | TGCA | M.Hpyfe97ORF7685P |
| 7690 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe77ORF40P (98% identity) | M.Hpyfe97ORF40P | |
| 50 | R | HpyTW10ORF7240P (98% identity) | Hpyfe97ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 655 | type III restriction endonuclease subunit R | |||
| 660 | R | HpyTW05ORF6615P (92% identity) | Hpyfe97ORF665P | |
| 665 | M | M.Hpyfe71ORF630P (97% identity) | M.Hpyfe97ORF665P | |
| 670 | DNA/RNA non-specific endonuclease | |||
| 7220 | Dam family site-specific | |||
| ??? | M | M.Hpyfe123ORF7160P (97% identity) | M.Hpyfe97ORF7225P | |
| 7230 | R | HpyTW05ORF2780P (95% identity) | Hpyfe97ORF7225P | |
| 7235 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3130 | type I glutamate--ammonia ligase | |||
| 3135 | R | Hpyfe92GmrSD2P (89% identity) | Hpyfe97GmrSDP | |
| 3140 | 50S ribosomal protein L9 | |||
| 3890 | sel1 repeat family protein | |||
| 3895 | R | HpyJA101GmrSD2P (95% identity) | Hpyfe97GmrSD2P | |
| 3900 | NAD(P)H-dependent oxidoreductase | |||