Helicobacter pylori Hpfe099 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe099 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,642,597 bp
GenBank #: CP094080
REBASE acronym: Hpyfe99
Org_num: 57340
All begin MPG38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4615 | outer membrane beta-barrel protein HofF | |||
| 4620 | S | S.HpyBR10XIV (96% identity) | CCANNNNNNNRTC | S.Hpyfe99ORF4620P |
| 4625 | cadmium-translocating P-type ATPase | |||
| 4900 | hydroxyethylthiazole kinase | |||
| 4905 | R | Hpyfe114ORF4605P (98% identity) | CAYNNNNNNNTTC | Hpyfe99ORF4915P |
| 4910 | S | S.HpyCA7ORF5505P (95% identity) | CAYNNNNNNNTTC | S.Hpyfe99ORF4915P |
| 4915 | M | M.Hpybs3ORFEP (97% identity) | CAYNNNNNNNTTC | M.Hpyfe99ORF4915P |
| 4920 | phosphatase PAP2 family protein | |||
| 5175 | motility associated factor glycosyltransferase | |||
| ??? | R | Hpybs1ORFTP (95% identity) | CCANNNNNNTAA | Hpyfe99ORF5195P |
| 5195 | M | M.Hpyfe120ORF4990P (99% identity) | CCANNNNNNTAA | M.Hpyfe99ORF5195P |
| 5200 | S | S.HpyQ59ORFIP (98% identity) | CCANNNNNNTAA | S.Hpyfe99ORF5195P |
| 5210 | RNA degradosome polyphosphate kinase | |||
| 7890 | M48 family metallopeptidase | |||
| 7895 | R | HpyMKF3ORF1462P (97% identity) | CAANNNNNNNTAYG | Hpyfe99ORF7900P |
| 7900 | M | M.Hpyfe49ORF7715P (97% identity) | CAANNNNNNNTAYG | M.Hpyfe99ORF7900P |
| 7905 | S | S.HpyK28V (98% identity) | CAANNNNNNNTAYG | S.Hpyfe99ORF7900P |
| 7910 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | ABC transporter ATP-binding protein | |||
| 60 | RM | Hpyfe81ORF55P (93% identity) | Hpyfe99ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe99ORF140P |
| 140 | M | M2.Hpy78ORF1470P (93% identity) | CCATC | M1.Hpyfe99ORF140P |
| 145 | M | M1.HpyMA06VI (99% identity) | CCATC | M2.Hpyfe99ORF140P |
| 150 | LptF/LptG family permease | |||
| 1560 | IceA2 protein | |||
| 1565 | M | M.Hpyfe36ORF1425P (99% identity) | CATG | M.Hpyfe99ORF1565P |
| 1570 | HAD family hydrolase | |||
| 2010 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2015 | M | M.Hpyfe33ORF1850P (99% identity) | GCGC | M.Hpyfe99ORF2015P |
| 2020 | R | Hpyfe33ORF1850P (99% identity) | GCGC | Hpyfe99ORF2015P |
| 2025 | 144 aa hypothetical protein | |||
| 2195 | Laminin subunit alpha-2 precursor | |||
| 2200 | R | Hpyfe85ORF2060P (98% identity) | TCNNGA | Hpyfe99ORF2205P |
| 2205 | M | M.HpyK042XII (99% identity) | TCNNGA | M.Hpyfe99ORF2205P |
| 2210 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2860 | ATP-dependent helicase | |||
| 2865 | M | M.HpyK28X (98% identity) | GTNNAC | M.Hpyfe99ORF2865P |
| 2870 | R | HpyKG10VIIIP (93% identity) | GTNNAC | Hpyfe99ORF2865P |
| 2875 | flagellar hook protein FlgE | |||
| 3875 | (Fe-S)-binding protein | |||
| 3880 | RM | HpyTN2ORF7280P (87% identity) | Hpyfe99ORF3880P | |
| 3885 | outer membrane protein | |||
| 3975 | 3-5 exonuclease | |||
| 3980 | M | M.Hpyfe120ORF3930P (100% identity) | CCNNGG | M.Hpyfe99ORF3980P |
| 3985 | R | Hpyfe120ORF3930P (100% identity) | CCNNGG | Hpyfe99ORF3980P |
| 3990 | 3-5 exonuclease | |||
| 5070 | catalase | |||
| 5075 | R | HpyUM023ORFAP (99% identity) | ACGT | Hpyfe99ORF5080P |
| 5080 | M | M.Hpyfe124ORF4660P (99% identity) | ACGT | M.Hpyfe99ORF5080P |
| 5085 | GIY-YIG nuclease family protein | |||
| 5080 | DNA cytosine methyltransferase | |||
| 5085 | R | HpyNP13IIP (99% identity) | ACNGT | Hpyfe99ORF5090P |
| 5090 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe99ORF5090P |
| 5095 | translational GTPase TypA | |||
| 5100 | lipopolysaccharide heptosyltransferase family | |||
| 5105 | M | M.HpyMA23IV (98% identity) | ATTAAT | M.Hpyfe99ORF5105P |
| 5110 | Hop family outer membrane protein HopJ/HopK | |||
| 5625 | group I intron-associated PD-(D/E)XK | |||
| 5630 | M | M.HpyP88ORFIP (100% identity) | GCNGC | M.Hpyfe99ORF5630P |
| 5635 | translation elongation factor 4 | |||
| 6060 | AAA family ATPase | |||
| 6065 | M | M.HpyJA101IV (99% identity) | CCGG | M.Hpyfe99ORF6065P |
| 6070 | R | HpyCHN1ORF5450P (95% identity) | CCGG | Hpyfe99ORF6065P |
| 6075 | 204 aa hypothetical protein | |||
| 6075 | 204 aa hypothetical protein | |||
| 6080 | M | M.Hpyfe103ORF5955P (99% identity) | TCGA | M.Hpyfe99ORF6080P |
| 6085 | exodeoxyribonuclease VII large subunit | |||
| 6505 | pseudaminic acid synthase | |||
| 6510 | R | R2.Hpyfe64ORF1930P (98% identity) | R1.Hpyfe99ORF6520P | |
| 6515 | R | R1.Hpyfe118ORF6420P (98% identity) | R2.Hpyfe99ORF6520P | |
| ??? | M | M2.HpyTW16ORF915P (96% identity) | M1.Hpyfe99ORF6520P | |
| ??? | M | M.HpyUM111ORF890P (98% identity) | M2.Hpyfe99ORF6520P | |
| 6535 | elongation factor P | |||
| 6975 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6980 | M | M.Hpyfe28ORF6550P (99% identity) | GATC | M.Hpyfe99ORF6980P |
| 6985 | R | Hpyfe28ORF6550P (100% identity) | GATC | Hpyfe99ORF6980P |
| 6995 | ACP S-malonyltransferase | |||
| 7170 | sodium/proline symporter PutP | |||
| 7175 | M | M2.HpyTW09VIP (98% identity) | M1.Hpyfe99ORF7175P | |
| 7180 | M | M1.HpyOK30ORFNP (98% identity) | CCTC | M2.Hpyfe99ORF7175P |
| 7185 | agmatine deiminase | |||
| 7230 | DNA methyltransferase | |||
| 7235 | R | HpySG05VIIP (98% identity) | GANTC | Hpyfe99ORF7240P |
| 7240 | M | M.Hpyfe57ORF6965P (100% identity) | GANTC | M.Hpyfe99ORF7240P |
| 7245 | 309 aa hypothetical protein | |||
| 7240 | site-specific DNA-methyltransferase | |||
| 7245 | RM | HpyPE110ORF6580P (23% identity) | Hpyfe99ORF7245P | |
| 7250 | N-6 DNA methylase | |||
| 7245 | 309 aa hypothetical protein | |||
| 7250 | RM | HpyK014ORF250P (72% identity) | Hpyfe99ORF7250P | |
| 7255 | carboxylating nicotinate-nucleotide | |||
| 7765 | 177 aa hypothetical protein | |||
| 7770 | R | HpyTW20IIP (100% identity) | TGCA | Hpyfe99ORF7775P |
| 7775 | M | M.HpyK047III (98% identity) | TGCA | M.Hpyfe99ORF7775P |
| 7780 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy928ORFCP (95% identity) | M.Hpyfe99ORF40P | |
| 50 | R | HpyK043ORF7155P (97% identity) | Hpyfe99ORF40P | |
| 55 | ABC transporter ATP-binding protein | |||
| 765 | type III restriction endonuclease subunit R | |||
| 770 | R | HpyTW08ORF6555P (93% identity) | Hpyfe99ORF775P | |
| 775 | M | M.Hpy30ORF1273P (97% identity) | M.Hpyfe99ORF775P | |
| 780 | ABC transporter ATP-binding protein/permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3110 | type I glutamate--ammonia ligase | |||
| 3115 | R | Hpyfe52GmrSDP (90% identity) | Hpyfe99GmrSDP | |
| 3120 | 50S ribosomal protein L9 | |||
| 3690 | sel1 repeat family protein | |||
| 3695 | R | Hpyfe68GmrSD2P (94% identity) | Hpyfe99GmrSD2P | |
| 3700 | NAD(P)H-dependent oxidoreductase | |||