Helicobacter pylori Hpfe100 |
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Putative Helicobacter pylori Hpfe100 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,555,854 bp
GenBank #: CP094079
REBASE acronym: Hpyfe100
Org_num: 57341
All begin MPG05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2990 | phosphatase PAP2 family protein | |||
| 2995 | M | M.HpySG12ORF2550P (96% identity) | M.Hpyfe100ORF2995P | |
| 3000 | S | S.Hpyfe100ORF3290P (99% identity) | S.Hpyfe100ORF2995P | |
| 3005 | R | HpyML1ORFXP (96% identity) | Hpyfe100ORF2995P | |
| 3010 | hydroxyethylthiazole kinase | |||
| 3285 | cadmium-translocating P-type ATPase | |||
| 3290 | S | S.Hpyfe100ORF2995P (99% identity) | S.Hpyfe100ORF3290P | |
| 3295 | outer membrane beta-barrel protein HofF | |||
| 7435 | M48 family metallopeptidase | |||
| 7440 | R | HpyJ010ORF7180P (94% identity) | Hpyfe100ORF7445P | |
| 7445 | M | M.HpyLI35ORF7405P (92% identity) | M.Hpyfe100ORF7445P | |
| 7450 | S | S.HpyPU007XVIII (50% identity) | S.Hpyfe100ORF7445P | |
| 7455 | cagY like domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyTW03XVI (84% identity) | Hpyfe100ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyCHN3ORF7135P (98% identity) | CYANNNNNNTTC | Hpyfe100ORF270P |
| 275 | S | S.HpyNG17ORF7250P (92% identity) | S.Hpyfe100ORF270P | |
| 280 | DNA polymerase I | |||
| 555 | UDP-N-acetylmuramate dehydrogenase | |||
| 560 | M | M.HpyMA06ORF6885P (99% identity) | M.Hpyfe100ORF560P | |
| 565 | R | Hpyfe124ORF550P (92% identity) | Hpyfe100ORF560P | |
| 570 | glycosyltransferase family 8 protein | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | R | HpyTW16IP (94% identity) | CATG | Hpyfe100ORF1410P |
| 1410 | M | M.HpyTW18I (100% identity) | CATG | M.Hpyfe100ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1860 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1865 | M | M.HpyF94ORF182P (99% identity) | GCGC | M.Hpyfe100ORF1865P |
| 1870 | 144 aa hypothetical protein | |||
| 2040 | Laminin subunit alpha-2 precursor | |||
| 2045 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe100ORF2050P |
| 2050 | M | M.HpyK007ORF5110P (99% identity) | TCNNGA | M.Hpyfe100ORF2050P |
| 2055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.Hpyfe81ORF4825P (99% identity) | GTNNAC | M.Hpyfe100ORF2715P |
| 2720 | R | Hpyfe81ORF4825P (97% identity) | GTNNAC | Hpyfe100ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 4670 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4675 | R | Hpyfe29ORF4745P (93% identity) | GTAC | Hpyfe100ORF4680P |
| 4680 | M | M.HpyTW04X (99% identity) | GTAC | M.Hpyfe100ORF4680P |
| 4685 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4770 | catalase | |||
| 4775 | R | Hpyfe126ORF4870P (98% identity) | ACGT | Hpyfe100ORF4780P |
| 4780 | M | M.Hpyfe61ORF5000P (98% identity) | ACGT | M.Hpyfe100ORF4780P |
| 4785 | GIY-YIG nuclease family protein | |||
| 4780 | DNA cytosine methyltransferase | |||
| 4785 | R | HpyT026IIP (99% identity) | ACNGT | Hpyfe100ORF4790P |
| 4790 | M | M.Hpyfe76ORF4780P (100% identity) | ACNGT | M.Hpyfe100ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.HpyTW06ORF2295P (98% identity) | ATTAAT | M.Hpyfe100ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5765 | AAA family ATPase | |||
| 5770 | M | M.Hpyfe59ORF5820P (100% identity) | CCGG | M.Hpyfe100ORF5770P |
| 5775 | R | HpyK044ORF6495P (97% identity) | CCGG | Hpyfe100ORF5770P |
| 5780 | exodeoxyribonuclease VII large subunit | |||
| 6185 | pseudaminic acid synthase | |||
| 6190 | R | R2.HpyMA10ORF1155P (100% identity) | R2.Hpyfe100ORF6200P | |
| 6195 | R | R1.HpySG17ORF7290P (99% identity) | R1.Hpyfe100ORF6200P | |
| ??? | M | M2.HpyV001ORF945P (100% identity) | M2.Hpyfe100ORF6200P | |
| 6205 | DNA cytosine methyltransferase | |||
| 6210 | M | M1.HpySG33ORF920AP (99% identity) | M1.Hpyfe100ORF6200P | |
| 6215 | elongation factor P | |||
| 6200 | 198 aa hypothetical protein | |||
| 6205 | M | M1.HpyTW20ORF940P (48% identity) | M.Hpyfe100ORF6205P | |
| 6210 | DNA (cytosine-5-)-methyltransferase | |||
| 6605 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6610 | M | M.HpyU205IX (97% identity) | GATC | M.Hpyfe100ORF6610P |
| 6615 | HTH domain-containing protein | |||
| 6775 | bifunctional proline dehydrogenase/L-glutamate | |||
| ??? | M | M2.HpyPU002VIP (81% identity) | M1.Hpyfe100ORF6785P | |
| 6790 | M | M1.HpySG09XV (100% identity) | CCTC | M2.Hpyfe100ORF6785P |
| 6795 | agmatine deiminase | |||
| 7350 | 114 aa hypothetical protein | |||
| 7355 | R | HpyCHN2XIVP (98% identity) | TGCA | Hpyfe100ORF7360P |
| 7360 | M | M.HpyG272XIII (99% identity) | TGCA | M.Hpyfe100ORF7360P |
| 7365 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyK053ORF7035P (97% identity) | M.Hpyfe100ORF40P | |
| 50 | R | HpyOK34ORFHP (97% identity) | Hpyfe100ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 625 | type III restriction endonuclease subunit R | |||
| 630 | R | HpyUM077ORF6630P (93% identity) | Hpyfe100ORF635P | |
| 635 | M | M.HpyOK03ORFBP (96% identity) | M.Hpyfe100ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 6895 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyfe80ORF6895P (97% identity) | M.Hpyfe100ORF6900P | |
| 6905 | R | Hpy63ORF34P (95% identity) | Hpyfe100ORF6900P | |
| 6910 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4055 | NAD(P)H-dependent oxidoreductase | |||
| 4060 | R | HpySG33GmrSD2P (96% identity) | Hpyfe100GmrSD2P | |
| 4065 | sel1 repeat family protein | |||
| 4630 | 50S ribosomal protein L9 | |||
| 4635 | R | HpyK046GmrSDP (87% identity) | Hpyfe100GmrSDP | |
| 4640 | type I glutamate--ammonia ligase | |||