Helicobacter pylori Hpfe101 |
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Putative Helicobacter pylori Hpfe101 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,572,519 bp
GenBank #: CP094078
REBASE acronym: Hpyfe101
Org_num: 57342
All begin MPF83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4305 | outer membrane beta-barrel protein HofF | |||
| 4310 | S | S.Hpy42KORF4125P (65% identity) | CTANNNNNNNCTC | S.Hpyfe101ORF4310P |
| 4315 | cadmium-translocating P-type ATPase | |||
| 4600 | hydroxyethylthiazole kinase | |||
| 4605 | R | Hpyfe1ORF4805P (97% identity) | CCANNNNNNNNTGT | Hpyfe101ORF4615P |
| 4610 | S | S.Hpy78ORF599P (65% identity) | CCANNNNNNNNTGT | S.Hpyfe101ORF4615P |
| 4615 | M | M.Hpyfe56ORF3060P (96% identity) | CCANNNNNNNNTGT | M.Hpyfe101ORF4615P |
| 4625 | phosphatase PAP2 family protein | |||
| 4875 | motility associated factor glycosyltransferase | |||
| 4880 | R | Hpyfe104ORF3000P (96% identity) | CACNNNNNTG | Hpyfe101ORF4885P |
| 4885 | M | M.HpyT028ORF2215P (97% identity) | CACNNNNNTG | M.Hpyfe101ORF4885P |
| 4890 | S | S.Hpy3192ORF3080P (99% identity) | CACNNNNNTG | S.Hpyfe101ORF4885P |
| 4900 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 711 aa hypothetical protein | |||
| 60 | RM | Hpyfe57ORF60P (94% identity) | Hpyfe101ORF60P | |
| 65 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyOK314ORFGP (98% identity) | CYANNNNNNTTC | Hpyfe101ORF270P |
| 275 | S | S.HpyK051ORF7025P (51% identity) | S.Hpyfe101ORF270AP | |
| 280 | S | S2.Hpyfe16ORF280P (87% identity) | S.Hpyfe101ORF270BP | |
| 285 | DNA polymerase I | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | HpyJF38ORFAP (95% identity) | CATG | Hpyfe101ORF1420P |
| 1420 | M | M.Hpyfe36ORF1425P (98% identity) | CATG | M.Hpyfe101ORF1420P |
| 1425 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyK007X (98% identity) | GCGC | M.Hpyfe101ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| ??? | R | Hpyfe93ORF2050P (96% identity) | TCNNGA | Hpyfe101ORF2060P |
| 2060 | M | M.Hpyfe12ORF2065P (99% identity) | TCNNGA | M.Hpyfe101ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.HpyTW24XIV (97% identity) | GTNNAC | M.Hpyfe101ORF2705P |
| 2710 | R | Hpyfe23ORF2875P (98% identity) | GTNNAC | Hpyfe101ORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 2905 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2910 | M | M.HpyBS07ORF2130P (100% identity) | GTAC | M.Hpyfe101ORF2910P |
| 2915 | R | HpySG18IXP (98% identity) | GTAC | Hpyfe101ORF2910P |
| 2920 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4770 | catalase | |||
| 4775 | R | HpyTW21ORF2360P (100% identity) | ACGT | Hpyfe101ORF4780P |
| 4780 | M | M.Hpy310ORF465P (99% identity) | ACGT | M.Hpyfe101ORF4780P |
| 4785 | GIY-YIG nuclease family protein | |||
| 4780 | DNA cytosine methyltransferase | |||
| 4785 | R | Hpyfe97ORF5110P (98% identity) | ACNGT | Hpyfe101ORF4790P |
| 4790 | M | M.Hpybs3ORFQP (98% identity) | ACNGT | M.Hpyfe101ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.HpyK029II (99% identity) | ATTAAT | M.Hpyfe101ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5315 | group I intron-associated PD-(D/E)XK | |||
| 5320 | M | M.HpyNP12ORF1885P (99% identity) | GCNGC | M.Hpyfe101ORF5320P |
| 5325 | translation elongation factor 4 | |||
| 5515 | 128 aa hypothetical protein | |||
| 5520 | M | M.HpyQ56ORFHP (98% identity) | CTNAG | M.Hpyfe101ORF5520P |
| 5525 | R | Hpy1136ORFQP (98% identity) | CTNAG | Hpyfe101ORF5520P |
| 5530 | polysaccharide deacetylase | |||
| 5760 | AAA family ATPase | |||
| 5765 | M | M.HpyK016III (99% identity) | CCGG | M.Hpyfe101ORF5765P |
| 5770 | R | HpyF015IIP (93% identity) | CCGG | Hpyfe101ORF5765P |
| 5775 | exodeoxyribonuclease VII large subunit | |||
| 6445 | HTH domain-containing protein | |||
| 6450 | M | M.Hpy78ORF163P (97% identity) | GATC | M.Hpyfe101ORF6450P |
| 6455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6825 | DNA cytosine methyltransferase | |||
| 6830 | R | Hpyfe17ORF6805P (99% identity) | GTSAC | Hpyfe101ORF6835P |
| 6835 | M | M.Hpyfe17ORF6805P (96% identity) | M.Hpyfe101ORF6835P | |
| 6840 | HNH endonuclease | |||
| 6835 | site-specific DNA-methyltransferase | |||
| 6840 | R | HpyK99ORFQP (96% identity) | CCTC | Hpyfe101ORF6845P |
| 6845 | M | M2.HpyK035IVP (99% identity) | CCTC | M1.Hpyfe101ORF6845P |
| 6850 | M | M1.HpyC120VII (98% identity) | CCTC | M2.Hpyfe101ORF6845P |
| 6855 | agmatine deiminase | |||
| 6900 | DNA methyltransferase | |||
| 6905 | R | HpyTW03IIIP (98% identity) | GANTC | Hpyfe101ORF6910P |
| 6910 | M | M.Hpy23ORF46P (99% identity) | GANTC | M.Hpyfe101ORF6910P |
| 6915 | DNA methyltransferase | |||
| 6910 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyTW10ORF280P (90% identity) | Hpyfe101ORF6915P | |
| 6925 | carboxylating nicotinate-nucleotide | |||
| 6975 | copper response regulator transcription factor | |||
| 6980 | R | Hpyfe15ORF6865P (98% identity) | GAAGA | Hpyfe101ORF6985P |
| 6985 | M | M1.Hpyfe6ORF6865P (100% identity) | GAAGA | M1.Hpyfe101ORF6985P |
| 6990 | M | M1.HpyV009VII (100% identity) | GAAGA | M2.Hpyfe101ORF6985P |
| 6995 | DNA methylase | |||
| 7465 | 112 aa hypothetical protein | |||
| 7470 | R | Hpyfe32ORF7565P (98% identity) | TGCA | Hpyfe101ORF7475P |
| 7475 | M | M.HpyK047III (98% identity) | TGCA | M.Hpyfe101ORF7475P |
| 7480 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe57ORF40P (97% identity) | M.Hpyfe101ORF40P | |
| 50 | R | HpyJSHR31ORF70P (97% identity) | Hpyfe101ORF40P | |
| 55 | 711 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | Hpyfe122ORF630P (96% identity) | Hpyfe101ORF635P | |
| 635 | M | M.Hpyfe125ORF610P (96% identity) | M.Hpyfe101ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | type I glutamate--ammonia ligase | |||
| 2955 | R | HpyK037GmrSDP (87% identity) | Hpyfe101GmrSDP | |
| 2960 | 50S ribosomal protein L9 | |||
| 3525 | sel1 repeat family protein | |||
| 3530 | R | Hpyfe23GmrSD2P (94% identity) | Hpyfe101GmrSD2P | |
| 3535 | NAD(P)H-dependent oxidoreductase | |||