Helicobacter pylori Hpfe102 |
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Putative Helicobacter pylori Hpfe102 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,607,515 bp
GenBank #: CP094076
REBASE acronym: Hpyfe102
Org_num: 57343
All begin MPG56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3140 | DNA cytosine methyltransferase | |||
| 3145 | M | M.Hpyfe125ORF4500P (97% identity) | CTANNNNNNNTTC | M.Hpyfe102ORF3145P |
| 3150 | S | S.HpyCA20V (95% identity) | CTANNNNNNNTTC | S.Hpyfe102ORF3145P |
| 3155 | R | Hpyfe51ORF4665P (97% identity) | CTANNNNNNNTTC | Hpyfe102ORF3145P |
| 3160 | hydroxyethylthiazole kinase | |||
| 7610 | M48 family metallopeptidase | |||
| 7615 | R | HpyNP01ORF7300P (92% identity) | CCANNNNNNNTAG | Hpyfe102ORF7620P |
| 7620 | M | M.Hpyfe5ORF7635P (97% identity) | CCANNNNNNNTAG | M.Hpyfe102ORF7620P |
| 7625 | CAAX protease | |||
| 7630 | S | S.HpyOK44ORFHP (96% identity) | CCANNNNNNNTAG | S.Hpyfe102ORF7620P |
| 7635 | cagY like domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 711 aa hypothetical protein | |||
| 60 | RM | HpyUM077ORF3020P (91% identity) | Hpyfe102ORF60P | |
| 65 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyPF57ORF7025P (97% identity) | CYANNNNNNTTC | Hpyfe102ORF270P |
| 275 | S | S1.HpySG38ORF7170P (96% identity) | S1.Hpyfe102ORF270P | |
| 280 | S | S2.Hpy4109ORFCP (92% identity) | S2.Hpyfe102ORF270P | |
| 285 | DNA polymerase I | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | HpyH390rORF1435P (96% identity) | CATG | Hpyfe102ORF1420P |
| 1420 | M | M.HpySG02I (99% identity) | CATG | M.Hpyfe102ORF1420P |
| 1425 | HAD family hydrolase | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.HpyTW22XIII (98% identity) | GCGC | M.Hpyfe102ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2060 | Laminin subunit alpha-2 precursor | |||
| 2065 | R | HpyGC26ORFWP (97% identity) | TCNNGA | Hpyfe102ORF2070P |
| 2070 | M | M.HpyYN483ORFVP (99% identity) | TCNNGA | M.Hpyfe102ORF2070P |
| 2075 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2865 | ATP-dependent helicase | |||
| 2870 | M | M.HpySG15XIV (97% identity) | GTNNAC | M.Hpyfe102ORF2870P |
| 2875 | R | Hpyfe6ORF2680P (99% identity) | GTNNAC | Hpyfe102ORF2870P |
| 2880 | flagellar hook protein FlgE | |||
| 3130 | phosphatase PAP2 family protein | |||
| 3135 | R | Hpyfe97ORF4935P (99% identity) | GGCC | Hpyfe102ORF3140P |
| 3140 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.Hpyfe102ORF3140P |
| 3145 | type I restriction-modification system subunit | |||
| 4020 | outer membrane protein | |||
| 4025 | RM | HpyTW10ORF3335P (91% identity) | Hpyfe102ORF4025P | |
| 4030 | (Fe-S)-binding protein | |||
| 4820 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4825 | R | Hpyfe7ORF4690P (100% identity) | GTAC | Hpyfe102ORF4830P |
| 4830 | M | M.Hpyfe7ORF4690P (99% identity) | GTAC | M.Hpyfe102ORF4830P |
| 4835 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4915 | catalase | |||
| 4920 | R | HpyJSHR6ORF9340P (100% identity) | ACGT | Hpyfe102ORF4925P |
| 4925 | M | M.Hpyfe106ORF4905P (99% identity) | ACGT | M.Hpyfe102ORF4925P |
| 4930 | GIY-YIG nuclease family protein | |||
| 4925 | DNA cytosine methyltransferase | |||
| 4930 | R | HpySG12IIP (99% identity) | ACNGT | Hpyfe102ORF4935P |
| 4935 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe102ORF4935P |
| 4940 | translational GTPase TypA | |||
| 4945 | lipopolysaccharide heptosyltransferase family | |||
| 4950 | M | M.HpyCHN8II (98% identity) | ATTAAT | M.Hpyfe102ORF4950P |
| 4955 | Hop family outer membrane protein HopJ/HopK | |||
| 5910 | AAA family ATPase | |||
| 5915 | M | M.HpyP89ORFYP (100% identity) | CCGG | M.Hpyfe102ORF5915P |
| 5920 | R | HpyK111IIIP (96% identity) | CCGG | Hpyfe102ORF5915P |
| 5925 | 64 aa hypothetical protein | |||
| 5925 | 64 aa hypothetical protein | |||
| 5930 | M | M.Hpyfe77ORF1855P (98% identity) | TCGA | M.Hpyfe102ORF5930P |
| 5935 | exodeoxyribonuclease VII large subunit | |||
| 6720 | alpha-1,2-fucosyltransferase | |||
| 6725 | M | M.Hpyfe96ORF6655P (98% identity) | GATC | M.Hpyfe102ORF6725P |
| 6730 | R | HpyTW10VIP (96% identity) | GATC | Hpyfe102ORF6725P |
| 6740 | ACP S-malonyltransferase | |||
| 6910 | sodium/proline symporter PutP | |||
| 6915 | M | M1.Hpyfe36ORF6790P (100% identity) | CCTC | M1.Hpyfe102ORF6915P |
| 6920 | M | M1.HpyCHN6IV (93% identity) | M2.Hpyfe102ORF6915P | |
| 6925 | agmatine deiminase | |||
| 6970 | DNA methyltransferase | |||
| 6975 | R | Hpyfe89ORF7150P (99% identity) | GANTC | Hpyfe102ORF6980P |
| 6980 | M | M.HpyNP09X (99% identity) | GANTC | M.Hpyfe102ORF6980P |
| 6985 | 337 aa hypothetical protein | |||
| 6980 | site-specific DNA-methyltransferase | |||
| 6985 | RM | Hpy828ORF6855P (26% identity) | Hpyfe102ORF6985P | |
| 6990 | N-6 DNA methylase | |||
| 6985 | 337 aa hypothetical protein | |||
| 6990 | RM | Hpyfe35ORF6925P (95% identity) | Hpyfe102ORF6990P | |
| 6995 | carboxylating nicotinate-nucleotide | |||
| 7045 | copper response regulator transcription factor | |||
| 7050 | R | HpyF227ORFHP (84% identity) | Hpyfe102ORF7050P | |
| 7055 | EcoRV family type II restriction endonuclease | |||
| 7050 | restriction endonuclease subunit R | |||
| 7055 | R | HpyUM077ORF3750P (98% identity) | GATATC | Hpyfe102ORF7060P |
| 7060 | M | M.HpyCOL210ORF6675P (98% identity) | GATATC | M.Hpyfe102ORF7060P |
| 7065 | site-specific DNA-methyltransferase | |||
| 7510 | DUF5343 domain-containing protein | |||
| ??? | M | M.HpyTW21ORF7220P (98% identity) | M.Hpyfe102ORF7515P | |
| 7525 | type II restriction endonuclease | |||
| 7520 | DNA cytosine methyltransferase | |||
| 7525 | R | Hpy192ORFSP (99% identity) | TGCA | Hpyfe102ORF7530P |
| 7530 | M | M.Hpy1100ORFVP (99% identity) | TGCA | M.Hpyfe102ORF7530P |
| 7535 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW21XVI (97% identity) | M.Hpyfe102ORF40P | |
| 50 | R | Hpyfe125ORF40P (98% identity) | Hpyfe102ORF40P | |
| 55 | 711 aa hypothetical protein | |||
| 630 | biotin synthase | |||
| 635 | R | Hpyfe125ORF610P (98% identity) | Hpyfe102ORF640P | |
| 640 | M | M.HpyJA107ORF6580P (96% identity) | M.Hpyfe102ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| 7060 | Dam family site-specific | |||
| 7065 | M | M.HpyUM065ORF2245P (98% identity) | M.Hpyfe102ORF7065P | |
| 7070 | R | Hpyfe16ORFAP (95% identity) | Hpyfe102ORF7065P | |
| 7075 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4205 | NAD(P)H-dependent oxidoreductase | |||
| 4210 | R | HpyU005GmrSD2P (88% identity) | Hpyfe102GmrSD2P | |
| 4215 | sel1 repeat family protein | |||
| 4780 | 50S ribosomal protein L9 | |||
| 4785 | R | Hpyfe78GmrSDP (88% identity) | Hpyfe102GmrSDP | |
| 4790 | type I glutamate--ammonia ligase | |||