Helicobacter pylori Hpfe103 |
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Putative Helicobacter pylori Hpfe103 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,597,927 bp
GenBank #: CP094074
REBASE acronym: Hpyfe103
Org_num: 57344
All begin MPG31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4290 | outer membrane beta-barrel protein HofF | |||
| 4295 | S | S.Hpyfe103ORF4610P (98% identity) | AACNNNNNNTTC | S.Hpyfe103ORF4295P |
| 4300 | cadmium-translocating P-type ATPase | |||
| 4595 | hydroxyethylthiazole kinase | |||
| 4600 | R | HpyU011ORF2670P (98% identity) | Hpyfe103ORF4610P | |
| 4605 | S | S.Hpyfe103ORF4295P (98% identity) | S.Hpyfe103ORF4610P | |
| 4610 | M | M.HpyQ59ORFMP (93% identity) | M.Hpyfe103ORF4610P | |
| 4615 | phosphatase PAP2 family protein | |||
| 4870 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyT026ORF2315P (95% identity) | CACNNNNNTG | Hpyfe103ORF4885P |
| 4885 | M | M.Hpyfe11ORF2860P (97% identity) | CACNNNNNTG | M.Hpyfe103ORF4885P |
| 4890 | S | S.HpyK044ORF5620P (98% identity) | CACNNNNNTG | S.Hpyfe103ORF4885P |
| 4900 | RNA degradosome polyphosphate kinase | |||
| 7650 | M48 family metallopeptidase | |||
| 7655 | R | Hpyfe17ORF7520P (96% identity) | Hpyfe103ORF7660P | |
| 7660 | M | M.Hpyfe48ORF7700P (97% identity) | M.Hpyfe103ORF7660P | |
| 7665 | S | S.HpyF211ORF1443P (96% identity) | S.Hpyfe103ORF7660P | |
| 7670 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyUM077ORF3020P (91% identity) | Hpyfe103ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpy5086ORF1440P (97% identity) | CCATC | Hpyfe103ORF135P |
| 135 | M | M2.HpyU425III (93% identity) | CCATC | M1.Hpyfe103ORF135P |
| 140 | M | M2.Hpyfe49ORF135P (100% identity) | CCATC | M2.Hpyfe103ORF135P |
| 145 | LptF/LptG family permease | |||
| 550 | UDP-N-acetylmuramate dehydrogenase | |||
| 555 | M | M.HpyMA06ORF6885P (99% identity) | M.Hpyfe103ORF555P | |
| 560 | R | HpyAL05ORFOP (99% identity) | Hpyfe103ORF555P | |
| 565 | glycosyltransferase family 8 protein | |||
| 1385 | serine O-acetyltransferase | |||
| 1390 | R | Hpyfe106ORF1405P (96% identity) | CATG | Hpyfe103ORF1395P |
| 1395 | M | M.Hpy271ORFF1P (97% identity) | CATG | M.Hpyfe103ORF1395P |
| 1400 | HAD family hydrolase | |||
| 1835 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1840 | M | M.HpyJ015XII (98% identity) | GCGC | M.Hpyfe103ORF1840P |
| 1845 | 144 aa hypothetical protein | |||
| 2015 | Laminin subunit alpha-2 precursor | |||
| 2020 | R | HpyTW20XIIP (100% identity) | TCNNGA | Hpyfe103ORF2025P |
| 2025 | M | M.Hpyfe88ORF2055P (100% identity) | TCNNGA | M.Hpyfe103ORF2025P |
| 2030 | FkbM family methyltransferase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.Hpyfe2ORF2675P (97% identity) | GTNNAC | M.Hpyfe103ORF2705P |
| 2710 | R | HpySG33XP (96% identity) | GTNNAC | Hpyfe103ORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 2915 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2920 | M | M.HpyT030X (99% identity) | GTAC | M.Hpyfe103ORF2920P |
| 2925 | R | HpyK110VIIIP (99% identity) | GTAC | Hpyfe103ORF2920P |
| 2930 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3745 | (Fe-S)-binding protein | |||
| 3750 | RM | HpyPF57ORF3445P (92% identity) | Hpyfe103ORF3750P | |
| 3755 | outer membrane protein | |||
| 4765 | catalase | |||
| 4770 | R | HpySG06ORF2315P (99% identity) | ACGT | Hpyfe103ORF4775P |
| 4775 | M | M.Hpyfe81ORF2760P (98% identity) | ACGT | M.Hpyfe103ORF4775P |
| 4780 | GIY-YIG nuclease family protein | |||
| 4775 | DNA cytosine methyltransferase | |||
| 4780 | R | Hpyfe39ORF4885P (99% identity) | ACNGT | Hpyfe103ORF4785P |
| 4785 | M | M.HpySG12II (99% identity) | ACNGT | M.Hpyfe103ORF4785P |
| 4790 | translational GTPase TypA | |||
| 4795 | lipopolysaccharide heptosyltransferase family | |||
| 4800 | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpyfe103ORF4800P |
| 4805 | Hop family outer membrane protein HopJ/HopK | |||
| 5680 | 125 aa hypothetical protein | |||
| 5685 | M | M.HpyV003IV (98% identity) | CTNAG | M.Hpyfe103ORF5685P |
| 5690 | R | HpyOK68ORFMP (94% identity) | CTNAG | Hpyfe103ORF5685P |
| 5695 | polysaccharide deacetylase | |||
| 5925 | AAA family ATPase | |||
| 5930 | M | M.Hpyfe70ORF5880P (99% identity) | CCGG | M.Hpyfe103ORF5930P |
| 5935 | R | Hpyfe16ORF2285P (73% identity) | CCGG | Hpyfe103ORF5930P |
| 5940 | transposase | |||
| 5950 | 204 aa hypothetical protein | |||
| 5955 | M | M.HpyK109XIII (100% identity) | TCGA | M.Hpyfe103ORF5955P |
| 5960 | exodeoxyribonuclease VII large subunit | |||
| 6760 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6765 | M | M.Hpyfe122ORF6615P (98% identity) | GATC | M.Hpyfe103ORF6765P |
| 6770 | R | HpyT030IXP (98% identity) | GATC | Hpyfe103ORF6765P |
| 6780 | ACP S-malonyltransferase | |||
| 6930 | DNA cytosine methyltransferase | |||
| 6935 | R | Hpyfe110ORF7335P (93% identity) | CCTC | Hpyfe103ORF6940P |
| 6940 | M | M1.Hpyfe49ORF6980P (98% identity) | CCTC | M1.Hpyfe103ORF6940P |
| 6945 | M | M2.Hpyfe120ORF6960P (98% identity) | CCTC | M2.Hpyfe103ORF6940P |
| 6950 | agmatine deiminase | |||
| 6995 | DNA methyltransferase | |||
| 7000 | R | Hpyfe78ORF7050P (99% identity) | GANTC | Hpyfe103ORF7005P |
| 7005 | M | M.HpyT027IX (98% identity) | GANTC | M.Hpyfe103ORF7005P |
| 7010 | N-6 DNA methylase | |||
| 7005 | site-specific DNA-methyltransferase | |||
| 7010 | RM | Hpy238ORF275P (90% identity) | Hpyfe103ORF7010P | |
| 7015 | carboxylating nicotinate-nucleotide | |||
| 7535 | DUF5343 domain-containing protein | |||
| 7540 | M | M.HpyNP07ORF7565P (99% identity) | M.Hpyfe103ORF7540P | |
| 7545 | type II restriction endonuclease | |||
| 7540 | DNA cytosine methyltransferase | |||
| 7545 | R | Hpyfe97ORF7685P (98% identity) | TGCA | Hpyfe103ORF7550P |
| 7550 | M | M.Hpyfe53ORF3635P (99% identity) | TGCA | M.Hpyfe103ORF7550P |
| 7555 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyMA15ORF7250P (97% identity) | M.Hpyfe103ORF40P | |
| 50 | R | HpyJSHR31ORF70P (97% identity) | Hpyfe103ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 620 | biotin synthase | |||
| 625 | R | HpyT029ORF6570P (92% identity) | Hpyfe103ORF630P | |
| 630 | M | M.HpyK034ORF6455P (98% identity) | M.Hpyfe103ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2960 | type I glutamate--ammonia ligase | |||
| 2965 | R | HpySG36GmrSDP (89% identity) | Hpyfe103GmrSD2P | |
| 2970 | 50S ribosomal protein L9 | |||
| 3550 | sel1 repeat family protein | |||
| 3555 | R | HpyK035GmrSD2P (96% identity) | Hpyfe103GmrSDP | |
| 3560 | NAD(P)H-dependent oxidoreductase | |||