Helicobacter pylori Hpfe104 |
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Putative Helicobacter pylori Hpfe104 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,574,424 bp
GenBank #: CP094073
REBASE acronym: Hpyfe104
Org_num: 57345
All begin MPG32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2710 | hydroxyethylthiazole kinase | |||
| 2715 | R | Hpyfe37ORF4560P (98% identity) | Hpyfe104ORF2725P | |
| 2720 | S | S.Hpyfe10ORF4765P (95% identity) | S.Hpyfe104ORF2725P | |
| 2725 | M | M.HpyCHN4IX (96% identity) | M.Hpyfe104ORF2725P | |
| 2730 | DNA cytosine methyltransferase | |||
| 2990 | motility associated factor glycosyltransferase | |||
| 2995 | R | Hpyfe82ORF4855P (96% identity) | CAGNNNNNTC | Hpyfe104ORF3000P |
| 3000 | M | M.Hpyfe37ORF4850P (99% identity) | CAGNNNNNTC | M.Hpyfe104ORF3000P |
| 3005 | S | S.HpyTW07X (99% identity) | CAGNNNNNTC | S.Hpyfe104ORF3000P |
| 3015 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 708 aa hypothetical protein | |||
| 55 | RM | HpyF235ORFXP (93% identity) | Hpyfe104ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe37ORF265P (99% identity) | CYANNNNNNTTC | Hpyfe104ORF265P |
| 270 | S | S.HpyJ182ORF285P (93% identity) | S.Hpyfe104ORF265P | |
| 275 | DNA polymerase I | |||
| 945 | ATP-dependent helicase | |||
| 950 | M | M.Hpyfe123ORF2835P (98% identity) | GTNNAC | M.Hpyfe104ORF950P |
| 955 | R | Hpy199ORFRP (97% identity) | GTNNAC | Hpyfe104ORF950P |
| 960 | flagellar hook protein FlgE | |||
| 1145 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 1150 | M | M.HpyT028X (99% identity) | GTAC | M.Hpyfe104ORF1150P |
| 1155 | R | Hpyfe39ORF4775P (95% identity) | GTAC | Hpyfe104ORF1150P |
| 1160 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 1850 | (Fe-S)-binding protein | |||
| 1855 | RM | Hpyfe37ORF3740P (92% identity) | Hpyfe104ORF1855P | |
| 1860 | outer membrane protein | |||
| 2555 | osmoprotection protein | |||
| 2560 | R | Hpyfe37ORF4400P (100% identity) | CGWCG | Hpyfe104ORF2565P |
| 2565 | M | M.Hpyfe8ORF2470P (100% identity) | CGWCG | M.Hpyfe104ORF2565P |
| 2570 | ABC transporter permease/substrate-binding | |||
| 2725 | type I restriction-modification system subunit | |||
| 2730 | M | M.Hpyfe37ORF4565P (100% identity) | GGCC | M.Hpyfe104ORF2730P |
| 2735 | R | Hpyfe37ORF4565P (99% identity) | GGCC | Hpyfe104ORF2730P |
| 2740 | phosphatase PAP2 family protein | |||
| 2885 | catalase | |||
| 2890 | R | Hpyfe97ORF5100P (99% identity) | ACGT | Hpyfe104ORF2895P |
| 2895 | M | M.HpyK021ORF2315P (99% identity) | ACGT | M.Hpyfe104ORF2895P |
| 2900 | GIY-YIG nuclease family protein | |||
| 2895 | DNA cytosine methyltransferase | |||
| 2900 | R | Hpyfe37ORF4750P (100% identity) | ACNGT | Hpyfe104ORF2905P |
| 2905 | M | M.Hpyfe37ORF4750P (99% identity) | ACNGT | M.Hpyfe104ORF2905P |
| 2910 | translational GTPase TypA | |||
| 2915 | lipopolysaccharide heptosyltransferase family | |||
| 2920 | M | M.HpySP503II (97% identity) | ATTAAT | M.Hpyfe104ORF2920P |
| 2925 | Hop family outer membrane protein HopJ/HopK | |||
| 3430 | group I intron-associated PD-(D/E)XK | |||
| 3435 | M | M.Hpyfe37ORF5290P (100% identity) | GCNGC | M.Hpyfe104ORF3435P |
| 3440 | translation elongation factor 4 | |||
| 3865 | AAA family ATPase | |||
| 3870 | M | M.Hpyfe8ORF1195P (99% identity) | CCGG | M.Hpyfe104ORF3870P |
| 3875 | R | HpyMKF3ORF317P (84% identity) | CCGG | Hpyfe104ORF3870P |
| 3880 | 204 aa hypothetical protein | |||
| 3880 | 204 aa hypothetical protein | |||
| 3885 | M | M.HpyJP26II (99% identity) | TCGA | M.Hpyfe104ORF3885P |
| 3890 | exodeoxyribonuclease VII large subunit | |||
| 4290 | pseudaminic acid synthase | |||
| 4295 | R | R2.Hpyfe37ORF6175P (99% identity) | R2.Hpyfe104ORF4305P | |
| 4300 | R | R1.Hpyfe37ORF6175P (100% identity) | R1.Hpyfe104ORF4305P | |
| 4305 | M | M2.Hpyfe37ORF6175P (100% identity) | M2.Hpyfe104ORF4305P | |
| 4310 | M | M1.Hpyfe37ORF6175P (99% identity) | M1.Hpyfe104ORF4305P | |
| 4315 | IS1595 family transposase | |||
| 4570 | ACP S-malonyltransferase | |||
| 4580 | R | HpyMA06IXP (96% identity) | GATC | Hpyfe104ORF4585P |
| 4585 | M | M.HpyK51ORF96P (97% identity) | GATC | M.Hpyfe104ORF4585P |
| 4590 | alpha-1,2-fucosyltransferase | |||
| 4825 | HAD family hydrolase | |||
| 4830 | M | M.Hpy38ORF1195P (99% identity) | CATG | M.Hpyfe104ORF4830P |
| 4835 | IceA2 protein | |||
| 5920 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5925 | M | M.Hpyfe37ORF2030P (100% identity) | TCNNGA | M.Hpyfe104ORF5925P |
| 5930 | R | Hpyfe37ORF2030P (100% identity) | TCNNGA | Hpyfe104ORF5925P |
| 5935 | Laminin subunit alpha-2 precursor | |||
| 6100 | 144 aa hypothetical protein | |||
| 6105 | M | M.HpyV006XVII (98% identity) | GCGC | M.Hpyfe104ORF6105P |
| 6110 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6705 | sodium/proline symporter PutP | |||
| 6710 | M | M2.HpyJ013ORF310P (100% identity) | CCTC | M1.Hpyfe104ORF6710P |
| 6715 | M | M1.HpyJ022XII (98% identity) | CCTC | M2.Hpyfe104ORF6710P |
| 6720 | TerC family protein | |||
| 6760 | DNA methyltransferase | |||
| 6765 | R | R1.Hpyfe62ORF6835P (99% identity) | R1.Hpyfe104ORF6780P | |
| 6770 | R | R2.Hpyfe62ORF6835P (100% identity) | R2.Hpyfe104ORF6780P | |
| 6775 | 57 aa hypothetical protein | |||
| 6780 | M | M.Hpyfe95ORF6900P (40% identity) | M.Hpyfe104ORF6780P | |
| 6785 | N-6 DNA methylase | |||
| 6780 | site-specific DNA-methyltransferase | |||
| 6785 | RM | HpySG17ORF290P (88% identity) | Hpyfe104ORF6785P | |
| 6790 | carboxylating nicotinate-nucleotide | |||
| 7310 | 126 aa hypothetical protein | |||
| 7315 | R | HpyCA18VIP (97% identity) | TGCA | Hpyfe104ORF7320P |
| 7320 | M | M.Hpyfe61ORF7600P (98% identity) | TGCA | M.Hpyfe104ORF7320P |
| 7325 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe80ORF40P (96% identity) | M.Hpyfe104ORF40P | |
| 45 | R | HpyT029ORF7135P (97% identity) | Hpyfe104ORF40P | |
| 50 | 708 aa hypothetical protein | |||
| 5600 | DNA/RNA non-specific endonuclease | |||
| 5605 | M | M.Hpyfe37ORF625P (99% identity) | M.Hpyfe104ORF5605P | |
| 5610 | R | HpyT027ORF6930P (94% identity) | Hpyfe104ORF5605P | |
| 5615 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1190 | type I glutamate--ammonia ligase | |||
| 1195 | R | HpyK023GmrSDP (83% identity) | Hpyfe104GmrSDP | |
| 1200 | 50S ribosomal protein L9 | |||
| 1665 | sel1 repeat family protein | |||
| 1670 | R | Hpyfe37GmrSD2P (99% identity) | Hpyfe104GmrSD2P | |
| 1675 | NAD(P)H-dependent oxidoreductase | |||