Helicobacter pylori Hpfe106 |
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Putative Helicobacter pylori Hpfe106 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,590,902 bp
GenBank #: CP094071
REBASE acronym: Hpyfe106
Org_num: 57346
All begin MPG62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3115 | phosphatase PAP2 family protein | |||
| 3120 | M | M.HpyK033ORF2725P (95% identity) | CTANNNNNNNCTT | M.Hpyfe106ORF3120P |
| 3125 | S | S.HpyI029XVII (96% identity) | CTANNNNNNNCTT | S.Hpyfe106ORF3120P |
| 3130 | R | HpyK008ORF2545P (97% identity) | CTANNNNNNNCTT | Hpyfe106ORF3120P |
| 3135 | hydroxyethylthiazole kinase | |||
| 5005 | motility associated factor glycosyltransferase | |||
| 5010 | R | HpyLIM7XIP (90% identity) | GACNNNNNTAA | Hpyfe106ORF5015P |
| 5015 | M | M.Hpyfe113ORF5760P (95% identity) | GACNNNNNTAA | M.Hpyfe106ORF5015P |
| 5020 | S | S.HpyHP94VI (98% identity) | GACNNNNNTAA | S.Hpyfe106ORF5015P |
| 5030 | RNA degradosome polyphosphate kinase | |||
| 7605 | M48 family metallopeptidase | |||
| 7610 | R | Hpyfe74ORF7605P (96% identity) | Hpyfe106ORF7615P | |
| 7615 | M | M.Hpyfe48ORF7700P (97% identity) | M.Hpyfe106ORF7615P | |
| 7620 | S | S.HpySG03ORF7455P (96% identity) | S.Hpyfe106ORF7615P | |
| 7625 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyYN483ORFFP (87% identity) | Hpyfe106ORF50P | |
| 55 | transcription termination factor NusA | |||
| 120 | outer membrane protein | |||
| 125 | R | HpyU425IIIP (98% identity) | CCATC | Hpyfe106ORF130P |
| 130 | M | M2.HpysHP34ORF1580P (98% identity) | CCATC | M1.Hpyfe106ORF130P |
| 135 | M | M1.HpyTW09IV (99% identity) | CCATC | M2.Hpyfe106ORF130P |
| 140 | LptF/LptG family permease | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpyfe12ORF1405P (99% identity) | CATG | Hpyfe106ORF1405P |
| 1405 | M | M.HpySW27I (97% identity) | CATG | M.Hpyfe106ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1995 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2000 | M | M.Hpyfe24ORF2020P (99% identity) | GCGC | M.Hpyfe106ORF2000P |
| 2005 | 144 aa hypothetical protein | |||
| 2185 | Laminin subunit alpha-2 precursor | |||
| 2190 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe106ORF2195P |
| 2195 | M | M.HpyOK06ORFUP (99% identity) | TCNNGA | M.Hpyfe106ORF2195P |
| 2200 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2845 | ATP-dependent helicase | |||
| 2850 | M | M.HpySG17IX (97% identity) | GTNNAC | M.Hpyfe106ORF2850P |
| 2855 | R | HpyAL04ORFOP (97% identity) | GTNNAC | Hpyfe106ORF2850P |
| 2860 | flagellar hook protein FlgE | |||
| 3950 | (Fe-S)-binding protein | |||
| 3955 | RM | HpyU011ORF3490P (88% identity) | Hpyfe106ORF3955P | |
| 3960 | outer membrane protein | |||
| 4895 | catalase | |||
| 4900 | R | HpyK110ORF3870P (100% identity) | ACGT | Hpyfe106ORF4905P |
| 4905 | M | M.HpyCH4IV (99% identity) | ACGT | M.Hpyfe106ORF4905P |
| 4910 | GIY-YIG nuclease family protein | |||
| 4905 | DNA cytosine methyltransferase | |||
| 4910 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe106ORF4915P |
| 4915 | M | M.HpyTW05III (98% identity) | ACNGT | M.Hpyfe106ORF4915P |
| 4920 | translational GTPase TypA | |||
| 4925 | lipopolysaccharide heptosyltransferase family | |||
| 4930 | M | M.Hpyfe113ORF5840P (98% identity) | ATTAAT | M.Hpyfe106ORF4930P |
| 4935 | Hop family outer membrane protein HopJ/HopK | |||
| 5445 | group I intron-associated PD-(D/E)XK | |||
| 5450 | M | M.HpyGRE040ORF1735P (100% identity) | GCNGC | M.Hpyfe106ORF5450P |
| 5455 | translation elongation factor 4 | |||
| 5890 | AAA family ATPase | |||
| 5895 | M | M.HpyK016III (98% identity) | CCGG | M.Hpyfe106ORF5895P |
| 5900 | R | HpyK25IIIP (90% identity) | CCGG | Hpyfe106ORF5895P |
| 5905 | 204 aa hypothetical protein | |||
| 5905 | 204 aa hypothetical protein | |||
| 5910 | M | M.Hpyfe24ORF5940P (99% identity) | TCGA | M.Hpyfe106ORF5910P |
| 5915 | exodeoxyribonuclease VII large subunit | |||
| 6320 | pseudaminic acid synthase | |||
| 6325 | R | R2.HpyK047ORF930P (98% identity) | R1.Hpyfe106ORF6325P | |
| 6330 | R | R1.HpySG14ORF960P (96% identity) | R2.Hpyfe106ORF6325P | |
| 6335 | elongation factor P | |||
| 6740 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6745 | M | M.Hpy192ORFDP (96% identity) | GATC | M.Hpyfe106ORF6745P |
| 6750 | R | HpyML3ORFNP (73% identity) | GATC | Hpyfe106ORF6745P |
| 6760 | ACP S-malonyltransferase | |||
| 6905 | sodium/proline symporter PutP | |||
| 6910 | M | M.Hpybs1ORFPP (99% identity) | CCTTC | M.Hpyfe106ORF6910P |
| 6915 | R | Hpybs1ORFPP (96% identity) | CCTTC | Hpyfe106ORF6910P |
| 6920 | HNH endonuclease | |||
| 6915 | restriction endonuclease | |||
| 6920 | R | HpyMA23XP (96% identity) | CCTC | Hpyfe106ORF6925P |
| 6925 | M | M2.HpyC018IXP (98% identity) | CCTC | M1.Hpyfe106ORF6925P |
| 6930 | M | M1.HpyTW20VII (99% identity) | CCTC | M2.Hpyfe106ORF6925P |
| 6935 | agmatine deiminase | |||
| 6980 | DNA methyltransferase | |||
| 6985 | R | Hpy169ORF6715P (92% identity) | GANTC | Hpyfe106ORF6990P |
| 6990 | M | M.Hpyfe99ORF7240P (99% identity) | GANTC | M.Hpyfe106ORF6990P |
| 6995 | DNA methyltransferase | |||
| 6990 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpyfe96ORF6940P (94% identity) | Hpyfe106ORF6995P | |
| 7005 | carboxylating nicotinate-nucleotide | |||
| 7520 | 133 aa hypothetical protein | |||
| 7525 | R | HpyTW24VIIP (99% identity) | TGCA | Hpyfe106ORF7530P |
| 7530 | M | M.Hpyfe82ORF7565P (99% identity) | TGCA | M.Hpyfe106ORF7530P |
| 7535 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyU011ORF7420P (97% identity) | M.Hpyfe106ORF40P | |
| 45 | R | HpyK114ORF7140P (95% identity) | Hpyfe106ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 625 | type III restriction endonuclease subunit R | |||
| 630 | R | HpyJ021ORF6505P (93% identity) | Hpyfe106ORF635P | |
| 635 | M | M.Hpyfe6ORF615P (96% identity) | M.Hpyfe106ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4175 | NAD(P)H-dependent oxidoreductase | |||
| 4180 | R | Hpyfe72GmrSD2P (95% identity) | Hpyfe106GmrSD2P | |
| 4185 | sel1 repeat family protein | |||
| 4755 | 50S ribosomal protein L9 | |||
| 4760 | R | Hpyfe70GmrSD2P (90% identity) | Hpyfe106GmrSDP | |
| 4765 | type I glutamate--ammonia ligase | |||