Helicobacter pylori Hpfe107 |
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Putative Helicobacter pylori Hpfe107 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,620,835 bp
GenBank #: CP094070
REBASE acronym: Hpyfe107
Org_num: 57347
All begin MPG33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4815 | outer membrane beta-barrel protein HofF | |||
| 4820 | S | S.Hpyfe107ORF5130P (100% identity) | CAANNNNNNNNTAG | S.Hpyfe107ORF4820P |
| 4825 | cadmium-translocating P-type ATPase | |||
| 5115 | hydroxyethylthiazole kinase | |||
| 5120 | R | Hpy51NORFC1P (97% identity) | CAANNNNNNNNTAG | Hpyfe107ORF5130P |
| 5125 | S | S.Hpyfe107ORF4820P (100% identity) | CAANNNNNNNNTAG | S.Hpyfe107ORF5130P |
| 5130 | M | M.Hpybs3ORFEP (96% identity) | CAANNNNNNNNTAG | M.Hpyfe107ORF5130P |
| 5135 | phosphatase PAP2 family protein | |||
| 7750 | M48 family metallopeptidase | |||
| 7755 | R | HpyK050IXP (97% identity) | CRTANNNNNNNTG | Hpyfe107ORF7760P |
| 7760 | M | M.HpyOK03ORFGP (97% identity) | CRTANNNNNNNTG | M.Hpyfe107ORF7760P |
| 7765 | S | S.Hpy66ORF85P (98% identity) | CRTANNNNNNNTG | S.Hpyfe107ORF7760P |
| 7770 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 718 aa hypothetical protein | |||
| 55 | RM | Hpy83ORF1501P (88% identity) | Hpyfe107ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe38ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe107ORF265P |
| 270 | S | S.HpyU429ORF7105P (93% identity) | S.Hpyfe107ORF265P | |
| 275 | DNA polymerase I | |||
| 1390 | serine O-acetyltransferase | |||
| 1395 | R | Hpyfe79ORF1415P (100% identity) | CATG | Hpyfe107ORF1400P |
| 1400 | M | M.Hpyfe79ORF1415P (99% identity) | CATG | M.Hpyfe107ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1640 | alpha-1,2-fucosyltransferase | |||
| 1645 | M | M.Hpyfe122ORF6615P (97% identity) | GATC | M.Hpyfe107ORF1645P |
| 1650 | R | Hpyfe79ORF6450P (98% identity) | GATC | Hpyfe107ORF1645P |
| 1660 | ACP S-malonyltransferase | |||
| 1910 | elongation factor P | |||
| 1915 | R | R2.Hpyfe79ORF6175P (100% identity) | R1.Hpyfe107ORF1915P | |
| 1920 | R | R1.Hpyfe79ORF6175P (100% identity) | R2.Hpyfe107ORF1915P | |
| 1925 | pseudaminic acid synthase | |||
| 2340 | exodeoxyribonuclease VII large subunit | |||
| 2345 | R | Hpyfe79ORF5750P (100% identity) | CCGG | Hpyfe107ORF2350P |
| 2350 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe107ORF2350P |
| 2355 | AAA family ATPase | |||
| 3300 | Hop family outer membrane protein HopJ/HopK | |||
| 3305 | M | M.Hpyfe79ORF4795P (99% identity) | ATTAAT | M.Hpyfe107ORF3305P |
| 3310 | lipopolysaccharide heptosyltransferase family | |||
| 3315 | translational GTPase TypA | |||
| 3320 | M | M.Hpyfe79ORF4780P (100% identity) | ACGT | M.Hpyfe107ORF3320P |
| 3325 | R | Hpyfe79ORF4780P (100% identity) | ACGT | Hpyfe107ORF3320P |
| 3330 | catalase | |||
| 4285 | outer membrane protein | |||
| 4290 | RM | HpyT029ORF3515P (84% identity) | Hpyfe107ORF4290P | |
| 4300 | (Fe-S)-binding protein | |||
| 5400 | flagellar hook protein FlgE | |||
| 5405 | R | HpyUM067ORF8150P (97% identity) | GTNNAC | Hpyfe107ORF5410P |
| 5410 | M | M.HpyIS5VII (98% identity) | GTNNAC | M.Hpyfe107ORF5410P |
| 5415 | ATP-dependent helicase | |||
| 6055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6060 | M | M.Hpyfe79ORF2055P (100% identity) | TCNNGA | M.Hpyfe107ORF6060P |
| 6065 | R | Hpyfe79ORF2055P (99% identity) | TCNNGA | Hpyfe107ORF6060P |
| 6070 | Laminin subunit alpha-2 precursor | |||
| 6240 | 144 aa hypothetical protein | |||
| 6245 | M | M.HpyJSHR31ORF3610P (99% identity) | GCGC | M.Hpyfe107ORF6245P |
| 6250 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7020 | DNA cytosine methyltransferase | |||
| 7025 | R | Hpyfe79ORF7015P (100% identity) | GTSAC | Hpyfe107ORF7030P |
| 7030 | M | M.Hpyfe79ORF7015P (100% identity) | GTSAC | M.Hpyfe107ORF7030P |
| 7035 | HNH endonuclease | |||
| 7030 | site-specific DNA-methyltransferase | |||
| 7035 | R | Hpyfe15ORF6740P (95% identity) | CCTC | Hpyfe107ORF7040P |
| 7040 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M1.Hpyfe107ORF7040P |
| 7045 | M | M2.Hpyfe12ORF7025P (99% identity) | CCTC | M2.Hpyfe107ORF7040P |
| 7050 | agmatine deiminase | |||
| 7095 | DNA methyltransferase | |||
| 7100 | R | Hpyfe79ORF7090P (100% identity) | GANTC | Hpyfe107ORF7105P |
| 7105 | M | M.HpyTW19X (99% identity) | GANTC | M.Hpyfe107ORF7105P |
| 7110 | 335 aa hypothetical protein | |||
| 7110 | 335 aa hypothetical protein | |||
| 7115 | RM | Hpyfe79ORF7095P (67% identity) | Hpyfe107ORF7115P | |
| 7120 | carboxylating nicotinate-nucleotide | |||
| 7170 | copper response regulator transcription factor | |||
| 7175 | R | Hpyfe79ORF7160P (31% identity) | GAAGA | Hpyfe107ORF7180P |
| 7180 | M | M2.Hpyfe79ORF7160P (100% identity) | GAAGA | M.Hpyfe107ORF7180P |
| 7185 | site-specific DNA-methyltransferase | |||
| 7640 | 107 aa hypothetical protein | |||
| 7645 | R | Hpyfe79ORF7640P (100% identity) | TGCA | Hpyfe107ORF7650P |
| 7650 | M | M.Hpyfe58ORF7675P (99% identity) | TGCA | M.Hpyfe107ORF7650P |
| 7655 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe24ORF40P (96% identity) | M.Hpyfe107ORF40P | |
| 45 | R | Hpyfe79ORF40P (99% identity) | Hpyfe107ORF40P | |
| 50 | 718 aa hypothetical protein | |||
| 605 | type III restriction endonuclease subunit R | |||
| 610 | R | HpyOK310ORFCP (92% identity) | Hpyfe107ORF615P | |
| 615 | M | M.Hpyfe40ORF645P (97% identity) | M.Hpyfe107ORF615P | |
| 620 | DNA/RNA non-specific endonuclease | |||
| 7180 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyQ59ORFCP (97% identity) | M.Hpyfe107ORF7185P | |
| 7190 | R | HpyH021ORF7735P (88% identity) | Hpyfe107ORF7185P | |
| 7195 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3470 | type I glutamate--ammonia ligase | |||
| 3475 | R | HpyMA23GmrSDP (90% identity) | Hpyfe107GmrSD2P | |
| 3480 | 50S ribosomal protein L9 | |||
| 4055 | sel1 repeat family protein | |||
| 4060 | R | Hpyfe79GmrSD2P (97% identity) | Hpyfe107GmrSDP | |
| 4065 | NAD(P)H-dependent oxidoreductase | |||