Helicobacter pylori Hpfe112 |
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Putative Helicobacter pylori Hpfe112 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,644,007 bp
GenBank #: CP094065
REBASE acronym: Hpyfe112
Org_num: 57350
All begin MPF94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3280 | cadmium-translocating P-type ATPase | |||
| 3285 | S | S.HpyB140ORF4870P (91% identity) | S.Hpyfe112ORF3285P | |
| 3290 | 48 aa hypothetical protein | |||
| 5015 | type I restriction endonuclease | |||
| 5020 | R | HpyK117ORF2250P (69% identity) | CTANNNNNNTC | Hpyfe112ORF5025P |
| 5025 | M | M.HpyTW06X (97% identity) | CTANNNNNNTC | M.Hpyfe112ORF5025P |
| 5030 | S | S.HpyCHN6ORF2240P (98% identity) | CTANNNNNNTC | S.Hpyfe112ORF5025P |
| 5040 | RNA degradosome polyphosphate kinase | |||
| 7875 | toprim domain-containing protein | |||
| 7880 | S | S.HpyAR10ORF7275P (81% identity) | S.Hpyfe112ORF7880P | |
| 7885 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | ABC transporter ATP-binding protein | |||
| 60 | RM | Hpyfe35ORF50P (92% identity) | Hpyfe112ORF60P | |
| 65 | RNA-directed DNA polymerase | |||
| 280 | ComF family protein | |||
| 285 | RM | Hpyfe2ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe112ORF285P |
| 290 | S | S1.HpyTW23ORF6895P (98% identity) | S1.Hpyfe112ORF285P | |
| 295 | S | S.HpyAL05ORFXP (49% identity) | CYANNNNNNTGA | S2.Hpyfe112ORF285P |
| 300 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | HpyK002IP (97% identity) | CATG | Hpyfe112ORF1415P |
| 1415 | M | M.HpyPE18I (97% identity) | CATG | M.Hpyfe112ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1585 | purine-nucleoside phosphorylase | |||
| 1590 | R | Hpyfe58ORF1625P (99% identity) | TCNGA | Hpyfe112ORF1595P |
| 1595 | M | M.HpyTW08ORF5590P (99% identity) | TCNGA | M.Hpyfe112ORF1595P |
| 1600 | Hop family adhesin HopQ | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.HpyJA101XI (98% identity) | GCGC | M.Hpyfe112ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | HpyP88ORFBP (99% identity) | TCNNGA | Hpyfe112ORF2065P |
| 2065 | M | M.HpyPO108X (99% identity) | TCNNGA | M.Hpyfe112ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.Hpyfe118ORF2920P (98% identity) | GTNNAC | M.Hpyfe112ORF2720P |
| 2725 | R | HpyFD430ORFB1P (98% identity) | GTNNAC | Hpyfe112ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 3810 | (Fe-S)-binding protein | |||
| 3815 | RM | Hpy67ORF724BP (79% identity) | Hpyfe112ORF3815P | |
| 3820 | KAP family NTPase | |||
| 3905 | 3-5 exonuclease | |||
| 3910 | M | M.HpyK118IV (100% identity) | CCNNGG | M.Hpyfe112ORF3910P |
| 3915 | R | Hpyfe99ORF3980P (99% identity) | CCNNGG | Hpyfe112ORF3910P |
| 3920 | 3-5 exonuclease | |||
| 4800 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4805 | R | HpyK25VIIIP (98% identity) | GTAC | Hpyfe112ORF4810P |
| 4810 | M | M.Hpyfe59ORF2905P (98% identity) | GTAC | M.Hpyfe112ORF4810P |
| 4815 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4905 | catalase | |||
| 4910 | R | Hpyfe92ORF5040P (99% identity) | ACGT | Hpyfe112ORF4915P |
| 4915 | M | M.HpyMA23ORF4150P (99% identity) | ACGT | M.Hpyfe112ORF4915P |
| 4920 | GIY-YIG nuclease family protein | |||
| 4915 | DNA cytosine methyltransferase | |||
| 4920 | R | Hpyfe80ORF4770P (99% identity) | ACNGT | Hpyfe112ORF4925P |
| 4925 | M | M.Hpyfe72ORF4780P (98% identity) | ACNGT | M.Hpyfe112ORF4925P |
| 4930 | translational GTPase TypA | |||
| 4935 | lipopolysaccharide heptosyltransferase family | |||
| 4940 | M | M.HpyGC26ORFEP (90% identity) | M.Hpyfe112ORF4940P | |
| 4945 | Hop family outer membrane protein HopJ/HopK | |||
| 5660 | 125 aa hypothetical protein | |||
| 5665 | M | M.Hpyfe17ORF5490P (100% identity) | CTNAG | M.Hpyfe112ORF5665P |
| 5670 | R | Hpyfe6ORF5470P (98% identity) | CTNAG | Hpyfe112ORF5665P |
| 5675 | polysaccharide deacetylase | |||
| 5905 | AAA family ATPase | |||
| 5910 | M | M.HpyOK316ORFUP (98% identity) | CCGG | M.Hpyfe112ORF5910P |
| 5915 | R | Hpyfe97ORF6090P (97% identity) | CCGG | Hpyfe112ORF5910P |
| 5920 | 204 aa hypothetical protein | |||
| 5920 | 204 aa hypothetical protein | |||
| 5925 | M | M.HpyOK212ORFXP (99% identity) | TCGA | M.Hpyfe112ORF5925P |
| 5930 | exodeoxyribonuclease VII large subunit | |||
| 6715 | 67 aa hypothetical protein | |||
| 6720 | M | M.HpyTW19VII (99% identity) | TGCA | M.Hpyfe112ORF6720P |
| 6725 | R | HpyMA08IIP (99% identity) | TGCA | Hpyfe112ORF6720P |
| 6730 | 177 aa hypothetical protein | |||
| 7185 | restriction endonuclease | |||
| 7190 | M | M.HpyV006VII (99% identity) | GAAGA | M1.Hpyfe112ORF7190P |
| 7195 | M | M1.HpyG272II (99% identity) | GAAGA | M2.Hpyfe112ORF7190P |
| 7200 | R | Hpyfe118ORF7240P (98% identity) | GAAGA | Hpyfe112ORF7190P |
| 7205 | copper response regulator transcription factor | |||
| 7255 | carboxylating nicotinate-nucleotide | |||
| 7260 | RM | HpyOK95ORFJP (86% identity) | Hpyfe112ORF7260P | |
| 7265 | site-specific DNA-methyltransferase | |||
| 7260 | N-6 DNA methylase | |||
| 7265 | M | M.Hpyfe99ORF7240P (99% identity) | GANTC | M.Hpyfe112ORF7265P |
| 7270 | R | Hpyfe78ORF7050P (98% identity) | GANTC | Hpyfe112ORF7265P |
| 7275 | DNA methyltransferase | |||
| 7315 | TerC family protein | |||
| 7320 | M | M2.Hpyfe106ORF6925P (98% identity) | CCTC | M1.Hpyfe112ORF7320P |
| 7325 | M | M1.Hpyfe78ORF6990P (69% identity) | M2.Hpyfe112ORF7320P | |
| 7330 | sodium/proline symporter PutP | |||
| 7725 | alpha-1,2-fucosyltransferase | |||
| 7730 | M | M.Hpyfe126ORF6550P (98% identity) | GATC | M.Hpyfe112ORF7730P |
| 7735 | R | HpyK029VIIP (96% identity) | GATC | Hpyfe112ORF7730P |
| 7745 | ACP S-malonyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyK009ORF7215P (96% identity) | M.Hpyfe112ORF40P | |
| 50 | R | Hpyfe24ORF40P (98% identity) | Hpyfe112ORF40P | |
| 55 | ABC transporter ATP-binding protein | |||
| 630 | biotin synthase | |||
| 635 | R | HpyK154ORF625P (96% identity) | Hpyfe112ORF640P | |
| 640 | M | M.HpyKG7ORF7040P (95% identity) | M.Hpyfe112ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4195 | NAD(P)H-dependent oxidoreductase | |||
| 4200 | R | HpyK115GmrSD2P (95% identity) | Hpyfe112GmrSDP | |
| 4205 | sel1 repeat family protein | |||