Helicobacter pylori Hpfe113 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe113 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,570,128 bp
GenBank #: CP094174
REBASE acronym: Hpyfe113
Org_num: 57351
All begin MPF81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3010 | FAD-dependent thymidylate synthase | |||
| 3015 | S | S.Hpy154ORF7685P (97% identity) | CRAANNNNNNNTC | S.Hpyfe113ORF3020P |
| 3020 | M | M.Hpyfe48ORF7700P (97% identity) | CRAANNNNNNNTC | M.Hpyfe113ORF3020P |
| 3025 | HsdR family type I site-specific | |||
| 5745 | RNA degradosome polyphosphate kinase | |||
| 5755 | S | S.Hpyfe123ORF5125P (97% identity) | CTANNNNNNTC | S.Hpyfe113ORF5760P |
| 5760 | M | M.Hpyfe106ORF5015P (95% identity) | CTANNNNNNTC | M.Hpyfe113ORF5760P |
| 5765 | R | HpyT029ORF4580P (94% identity) | CTANNNNNNTC | Hpyfe113ORF5760P |
| 5770 | motility associated factor glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 275 | flagellar hook protein FlgE | |||
| 280 | R | Hpyfe59ORF2710P (98% identity) | GTNNAC | Hpyfe113ORF285P |
| 285 | M | M.HpyAs010VII (99% identity) | GTNNAC | M.Hpyfe113ORF285P |
| 290 | ATP-dependent helicase | |||
| 925 | acetyl-CoA carboxylase biotin carboxylase | |||
| 930 | M | M.Hpyfe6ORF2030P (99% identity) | TCNNGA | M.Hpyfe113ORF930P |
| 935 | R | HpyPE111XIIIP (100% identity) | TCNNGA | Hpyfe113ORF930P |
| 940 | Laminin subunit alpha-2 precursor | |||
| 1110 | 144 aa hypothetical protein | |||
| 1115 | M | M.Hpyfe39ORF1895P (98% identity) | GCGC | M.Hpyfe113ORF1115P |
| 1120 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1570 | HAD family hydrolase | |||
| 1575 | M | M.HpyT029I (98% identity) | CATG | M.Hpyfe113ORF1575P |
| ??? | R | Hpyfe55ORF1430P (98% identity) | CATG | Hpyfe113ORF1575P |
| 1590 | serine O-acetyltransferase | |||
| 2705 | DNA polymerase I | |||
| 2710 | S | S.HpyOK30ORFCBP (59% identity) | S2.Hpyfe113ORF2720P | |
| 2715 | S | S1.HpyID11ORF6800P (96% identity) | S1.Hpyfe113ORF2720P | |
| 2720 | RM | HpySG14ORF6850P (98% identity) | CYANNNNNNTTC | Hpyfe113ORF2720P |
| 2725 | ComF family protein | |||
| 2930 | transcription termination factor NusA | |||
| 2935 | RM | Hpyfe76ORF60P (93% identity) | Hpyfe113ORF2935P | |
| 2940 | 713 aa hypothetical protein | |||
| 3285 | 67 aa hypothetical protein | |||
| 3290 | M | M.HpyK041V (98% identity) | TGCA | M.Hpyfe113ORF3290P |
| 3295 | R | Hpyfe96ORF7485P (97% identity) | TGCA | Hpyfe113ORF3290P |
| 3300 | 156 aa hypothetical protein | |||
| 3815 | carboxylating nicotinate-nucleotide | |||
| 3820 | RM | HpyGU1CORF460P (92% identity) | Hpyfe113ORF3820P | |
| 3825 | site-specific DNA-methyltransferase | |||
| 3820 | N-6 DNA methylase | |||
| 3825 | M | M.Hpyfe29ORF6865P (100% identity) | GANTC | M.Hpyfe113ORF3825P |
| 3830 | R | Hpyfe27ORF6900P (96% identity) | GANTC | Hpyfe113ORF3825P |
| 3835 | DNA methyltransferase | |||
| 3875 | TerC family protein | |||
| 3880 | M | M1.HpyK020V (97% identity) | CCTC | M1.Hpyfe113ORF3880P |
| 3885 | M | M1.Hpyfe17ORF6815P (99% identity) | CCTC | M2.Hpyfe113ORF3880P |
| 3890 | R | HpyGRE018VIIP (95% identity) | CCTC | Hpyfe113ORF3880P |
| 3895 | restriction endonuclease | |||
| 3890 | HNH endonuclease | |||
| 3895 | R | HpyPVP (84% identity) | CCTTC | Hpyfe113ORF3900P |
| 3900 | M | M.Hpyfe54ORF6810P (98% identity) | CCTTC | M.Hpyfe113ORF3900P |
| 3905 | sodium/proline symporter PutP | |||
| 4080 | ACP S-malonyltransferase | |||
| 4090 | R | HpyTW16XP (97% identity) | GATC | Hpyfe113ORF4095P |
| 4095 | M | M.Hpy4134ORFUP (97% identity) | GATC | M.Hpyfe113ORF4095P |
| 4100 | alpha-1,2-fucosyltransferase | |||
| 4885 | exodeoxyribonuclease VII large subunit | |||
| 4890 | M | M.Hpy464ORF1300P (98% identity) | TCGA | M.Hpyfe113ORF4890P |
| 4895 | 204 aa hypothetical protein | |||
| 4895 | 204 aa hypothetical protein | |||
| 4900 | R | HpyU204ORF1290P (86% identity) | CCGG | Hpyfe113ORF4905P |
| 4905 | M | M.Hpyfe38ORF5830P (100% identity) | CCGG | M.Hpyfe113ORF4905P |
| 4910 | AAA family ATPase | |||
| 5835 | Hop family outer membrane protein HopJ/HopK | |||
| 5840 | M | M.HpyMA15IV (99% identity) | ATTAAT | M.Hpyfe113ORF5840P |
| 5845 | lipopolysaccharide heptosyltransferase family | |||
| 5850 | translational GTPase TypA | |||
| 5855 | M | M.Hpyfe96ORF4835P (100% identity) | ACGT | M.Hpyfe113ORF5855P |
| 5860 | R | Hpyfe79ORF4780P (99% identity) | ACGT | Hpyfe113ORF5855P |
| 5865 | catalase | |||
| 5945 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5950 | M | M.Hpyfe7ORF4690P (99% identity) | GTAC | M.Hpyfe113ORF5950P |
| 5955 | R | HpyNP04XP (94% identity) | GTAC | Hpyfe113ORF5950P |
| 5960 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 6615 | (Fe-S)-binding protein | |||
| 6620 | RM | Hpyfe125ORF3670P (93% identity) | Hpyfe113ORF6620P | |
| 6625 | outer membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2345 | DNA/RNA non-specific endonuclease | |||
| 2350 | M | M.HpySG07XIII (97% identity) | M.Hpyfe113ORF2350P | |
| 2355 | R | Hpyfe74ORF640P (95% identity) | Hpyfe113ORF2350P | |
| 2360 | type III restriction endonuclease subunit R | |||
| 2940 | 713 aa hypothetical protein | |||
| 2945 | R | HpyTW04ORF7140P (97% identity) | Hpyfe113ORF2950P | |
| ??? | M | M.HpyP90ORFRP (97% identity) | M.Hpyfe113ORF2950P | |
| 2960 | ATP-dependent DNA helicase RecG | |||
| 3750 | rod shape-determining protein MreC | |||
| 3755 | R | HpyTW04ORF200P (95% identity) | Hpyfe113ORF3760P | |
| 3760 | M | M.HpyCHN4XI (98% identity) | M.Hpyfe113ORF3760P | |
| 3765 | copper response regulator transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5990 | type I glutamate--ammonia ligase | |||
| 5995 | R | HpyJA103GmrSDP (90% identity) | Hpyfe113GmrSD2P | |
| 6000 | 50S ribosomal protein L9 | |||
| 6430 | SEL1-like repeat protein | |||
| 6435 | R | Hpyfe52GmrSD2P (94% identity) | Hpyfe113GmrSDP | |
| 6440 | NAD(P)H-dependent oxidoreductase | |||