Helicobacter pylori Hpfe114 |
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Putative Helicobacter pylori Hpfe114 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,557,498 bp
GenBank #: CP094064
REBASE acronym: Hpyfe114
Org_num: 57352
All begin MPG37_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4590 | hydroxyethylthiazole kinase | |||
| 4595 | R | Hpyfe99ORF4915P (98% identity) | CTANNNNNNNNTGT | Hpyfe114ORF4605P |
| 4600 | S | S.Hpyfe37ORF4560P (96% identity) | CTANNNNNNNNTGT | S.Hpyfe114ORF4605P |
| 4605 | M | M.Hpyfe71ORF4730P (96% identity) | CTANNNNNNNNTGT | M.Hpyfe114ORF4605P |
| 4610 | phosphatase PAP2 family protein | |||
| 4880 | type I restriction endonuclease | |||
| 4885 | R | Hpy3ORF5480BP (96% identity) | GACNNNNNTTT | Hpyfe114ORF4890P |
| 4890 | M | M.Hpyfe99ORF5195P (98% identity) | GACNNNNNTTT | M.Hpyfe114ORF4890P |
| 4895 | S | S.HpyT030ORF2250P (99% identity) | GACNNNNNTTT | S.Hpyfe114ORF4890P |
| 4905 | RNA degradosome polyphosphate kinase | |||
| 7520 | M48 family metallopeptidase | |||
| 7525 | R | HpyMA08VP (97% identity) | CRTANNNNNNNTC | Hpyfe114ORF7530P |
| 7530 | M | M.Hpy55ORF1503P (97% identity) | CRTANNNNNNNTC | M.Hpyfe114ORF7530P |
| 7535 | S | S.HpyAR9III (98% identity) | CRTANNNNNNNTC | S.Hpyfe114ORF7530P |
| 7540 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpySG33ORF7330P (92% identity) | Hpyfe114ORF50P | |
| 55 | transcription termination factor NusA | |||
| 260 | VRR-NUC domain-containing protein | |||
| 265 | R | HpyK047ORF6810P (99% identity) | GGNCC | Hpyfe114ORF270P |
| 270 | M | M.Hpyfe110ORF290P (100% identity) | GGNCC | M.Hpyfe114ORF270P |
| 275 | S | S.HpyPO11ORF7395P (86% identity) | S.Hpyfe114ORF270P | |
| 280 | DNA polymerase I | |||
| 325 | addiction module antidote protein | |||
| 330 | M | M2.HpyTW18ORF7080P (100% identity) | M1.Hpyfe114ORF330P | |
| 335 | M | M2.HpyNCI23ORFWP (99% identity) | M2.Hpyfe114ORF330P | |
| 340 | R | Hpyfe56ORF355P (98% identity) | Hpyfe114ORF330P | |
| 345 | cytochrome-c peroxidase | |||
| 1430 | serine O-acetyltransferase | |||
| 1435 | R | HpyK114IP (97% identity) | CATG | Hpyfe114ORF1440P |
| 1440 | M | M.Hpyfe95ORF6175P (97% identity) | CATG | M.Hpyfe114ORF1440P |
| 1445 | HAD family hydrolase | |||
| 1885 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1890 | M | M.HpyBS06ORF2220P (97% identity) | GCGC | M.Hpyfe114ORF1890P |
| 1895 | 144 aa hypothetical protein | |||
| 2065 | Laminin subunit alpha-2 precursor | |||
| 2070 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | Hpyfe114ORF2075P |
| 2075 | M | M.HpyK109IV (99% identity) | TCNNGA | M.Hpyfe114ORF2075P |
| 2080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2720 | ATP-dependent helicase | |||
| 2725 | M | M.HpyK114XII (97% identity) | GTNNAC | M.Hpyfe114ORF2725P |
| 2730 | R | HpyK114XIIP (98% identity) | GTNNAC | Hpyfe114ORF2725P |
| 2735 | flagellar hook protein FlgE | |||
| 3785 | 450 aa hypothetical protein | |||
| 3790 | RM | Hpyfe125ORF3670P (93% identity) | Hpyfe114ORF3790P | |
| 3795 | (Fe-S)-binding protein | |||
| 4770 | catalase | |||
| 4775 | R | Hpyfe101ORF4780P (98% identity) | ACGT | Hpyfe114ORF4780P |
| 4780 | M | M.HpyAR10ORF2300P (99% identity) | ACGT | M.Hpyfe114ORF4780P |
| 4785 | GIY-YIG nuclease family protein | |||
| 4780 | DNA cytosine methyltransferase | |||
| 4785 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe114ORF4790P |
| 4790 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe114ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.Hpyfe122ORF4805P (98% identity) | ATTAAT | M.Hpyfe114ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5320 | group I intron-associated PD-(D/E)XK | |||
| 5325 | M | M.HpyPU001ORF1725P (99% identity) | GCNGC | M.Hpyfe114ORF5325P |
| 5330 | translation elongation factor 4 | |||
| 5530 | 119 aa hypothetical protein | |||
| 5535 | M | M.Hpyfe17ORF5490P (99% identity) | CTNAG | M.Hpyfe114ORF5535P |
| 5540 | R | Hpy23ORF910P (98% identity) | CTNAG | Hpyfe114ORF5535P |
| 5545 | polysaccharide deacetylase | |||
| 5780 | AAA family ATPase | |||
| 5785 | M | M.Hpyfe59ORF5820P (100% identity) | CCGG | M.Hpyfe114ORF5785P |
| 5790 | R | Hpyfe75ORF5835P (96% identity) | CCGG | Hpyfe114ORF5785P |
| 5795 | 202 aa hypothetical protein | |||
| 5795 | 202 aa hypothetical protein | |||
| 5800 | M | M.Hpyfe93ORF5890P (100% identity) | TCGA | M.Hpyfe114ORF5800P |
| 5805 | exodeoxyribonuclease VII large subunit | |||
| 6600 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6605 | M | M.Hpy52ORF105P (97% identity) | GATC | M.Hpyfe114ORF6605P |
| 6610 | R | HpyK002VP (94% identity) | GATC | Hpyfe114ORF6605P |
| 6620 | ACP S-malonyltransferase | |||
| 6805 | DNA cytosine methyltransferase | |||
| 6810 | R | HpyK99ORFQP (95% identity) | CCTC | Hpyfe114ORF6815P |
| 6815 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M1.Hpyfe114ORF6815P |
| 6820 | M | M1.HpySG07IV (99% identity) | CCTC | M2.Hpyfe114ORF6815P |
| 6825 | agmatine deiminase | |||
| 6870 | DNA methyltransferase | |||
| 6875 | R | HpyTW09IIIP (51% identity) | Hpyfe114ORF6890P | |
| 6880 | 245 aa hypothetical protein | |||
| 6885 | 56 aa hypothetical protein | |||
| 6890 | M | M.Hpyfe95ORF6900P (40% identity) | M.Hpyfe114ORF6890P | |
| 6895 | DNA methyltransferase | |||
| 6890 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyHK840ORFEP (90% identity) | Hpyfe114ORF6895P | |
| 6910 | carboxylating nicotinate-nucleotide | |||
| 7420 | DUF5343 domain-containing protein | |||
| 7425 | M | M.Hpy39ORFE1P (99% identity) | M.Hpyfe114ORF7425P | |
| 7430 | type II restriction endonuclease | |||
| 7425 | DNA cytosine methyltransferase | |||
| 7430 | R | Hpybs3ORFHP (98% identity) | TGCA | Hpyfe114ORF7435P |
| 7435 | M | M.Hpyfe93ORF7595P (98% identity) | TGCA | M.Hpyfe114ORF7435P |
| 7440 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyT028XIX (96% identity) | M.Hpyfe114ORF40P | |
| 45 | R | HpyTW02ORF6990P (97% identity) | Hpyfe114ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 640 | type III restriction endonuclease subunit R | |||
| 645 | R | HpyF225ORFA1P (91% identity) | Hpyfe114ORF650P | |
| 650 | M | M.HpyK025ORF6685P (96% identity) | M.Hpyfe114ORF650P | |
| 655 | ABC transporter ATP-binding protein/permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2970 | type I glutamate--ammonia ligase | |||
| 2975 | R | Hpyfe8GmrSDP (94% identity) | Hpyfe114GmrSDP | |
| 2980 | 50S ribosomal protein L9 | |||
| 3555 | sel1 repeat family protein | |||
| 3560 | R | Hpyfe120GmrSDP (95% identity) | Hpyfe114GmrSD2P | |
| 3565 | NAD(P)H-dependent oxidoreductase | |||